| Basic Information | |
|---|---|
| Species | Mimulus guttatus |
| Cazyme ID | mgv1a022558m |
| Family | PL4 |
| Protein Properties | Length: 625 Molecular Weight: 71699.9 Isoelectric Point: 7.8071 |
| Chromosome | Chromosome/Scaffold: 100 Start: 805624 End: 813655 |
| Description | Rhamnogalacturonate lyase family protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL4 | 3 | 607 | 0 |
| KVEIDNGIVKLTLMKPSGYISGVRYKGIDNILENRLKEARRGYWDIVWSRPDIRTRSFFDTLESTSFRVVAETEDQVEISFTKTWNLSLGNNFVPLNIDK RYIVLSGVSGFYSYAIFEHLKGWPDLNVDEARIAFKLRHDMFDYMAISDDKQRIMPTENDRIIGQTLDYGEAVLLTNPVNPKLRGEVDDKYQYSCDNKDN RVHGWISSDKRIGFWVITPSDEFRAGGPFKPDLTSHAGPTALAVFFSGHYAGPNFGVRLRNGEPWKKVYGPVFMYLNSDTSDEPRALWEDAKKQMSQETK KWPYDFPLSSEFPKANQRGTINGRLFVRDRYINRELIPAKSAYVGLARPGEVGSWQAEAKGYQFWTQTDDNGYFTITSVRADTYNLYAYVPGIIGDYKHN GDIIVRPEIQIQIGDLVYDPPRNGPTLWEIGIPDRTAAEFYVPDPAPSLVNKLFINHIEKFRQYGLWDRYTDLYPSEDLVYTVGVSDYRKDWFFAHVNRN VDKYNYVPTTWRILFDAKNVSRTGNYTLRLALASANFAEIQVRINDPDARNPHFTTGRIGRDNAIARHGIHGQYLLYNVDLLGFQLINGKNTIYLKQARA SSPFN | |||
| Full Sequence |
|---|
| Protein Sequence Length: 625 Download |
| MVKVEIDNGI VKLTLMKPSG YISGVRYKGI DNILENRLKE ARRGYWDIVW SRPDIRTRSF 60 FDTLESTSFR VVAETEDQVE ISFTKTWNLS LGNNFVPLNI DKRYIVLSGV SGFYSYAIFE 120 HLKGWPDLNV DEARIAFKLR HDMFDYMAIS DDKQRIMPTE NDRIIGQTLD YGEAVLLTNP 180 VNPKLRGEVD DKYQYSCDNK DNRVHGWISS DKRIGFWVIT PSDEFRAGGP FKPDLTSHAG 240 PTALAVFFSG HYAGPNFGVR LRNGEPWKKV YGPVFMYLNS DTSDEPRALW EDAKKQMSQE 300 TKKWPYDFPL SSEFPKANQR GTINGRLFVR DRYINRELIP AKSAYVGLAR PGEVGSWQAE 360 AKGYQFWTQT DDNGYFTITS VRADTYNLYA YVPGIIGDYK HNGDIIVRPE IQIQIGDLVY 420 DPPRNGPTLW EIGIPDRTAA EFYVPDPAPS LVNKLFINHI EKFRQYGLWD RYTDLYPSED 480 LVYTVGVSDY RKDWFFAHVN RNVDKYNYVP TTWRILFDAK NVSRTGNYTL RLALASANFA 540 EIQVRINDPD ARNPHFTTGR IGRDNAIARH GIHGQYLLYN VDLLGFQLIN GKNTIYLKQA 600 RASSPFNGVL YDYIRLEGPF GSPQ* 660 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd10316 | RGL4_M | 1.0e-28 | 319 | 418 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10317 | RGL4_C | 6.0e-48 | 430 | 617 | 190 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10320 | RGL4_N | 1.0e-70 | 6 | 284 | 283 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| pfam06045 | Rhamnogal_lyase | 1.0e-79 | 1 | 189 | 191 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_172462.2 | 0 | 4 | 619 | 58 | 673 | lyase [Arabidopsis thaliana] |
| RefSeq | XP_002308510.1 | 0 | 3 | 622 | 56 | 674 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002527229.1 | 0 | 3 | 619 | 53 | 667 | lyase, putative [Ricinus communis] |
| RefSeq | XP_002527245.1 | 0 | 4 | 619 | 2 | 618 | lyase, putative [Ricinus communis] |
| RefSeq | XP_002527357.1 | 0 | 4 | 622 | 15 | 637 | lyase, putative [Ricinus communis] |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DY969340 | 321 | 219 | 537 | 0 |
| GW864372 | 311 | 135 | 442 | 0 |
| GR159220 | 236 | 256 | 491 | 0 |
| GR312932 | 283 | 344 | 622 | 0 |
| EL409069 | 278 | 335 | 611 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
