Basic Information | |
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Species | Mimulus guttatus |
Cazyme ID | mgv1a023133m |
Family | GH28 |
Protein Properties | Length: 381 Molecular Weight: 41151.5 Isoelectric Point: 8.3246 |
Chromosome | Chromosome/Scaffold: 285 Start: 208110 End: 210902 |
Description | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 35 | 367 | 0 |
DEACGYSGRSRVFIPNGIFLLDSVSFVGPCSGPISFLVKGTIRAPTDSRRFFTDTWIGFRYVSRLTVKGGGIFDGQGQAAWPFNDCKTNDQCKPLPTTLR FDFVNNSRVLNLHSINSKSSHVNIFACGNFNITNVRLTAPSDSPNTDGIHIGSSSQIKITHVRISTGDDCISMVSGSQNIEIYDVSCGPGHGISIGSLGR SHEHEYVKGITVRNCSFIGSDNGVRIKTWSPSLYSEASDMTFQDIFMQNPKNPIVIDQQYCPSSHCLMKSESRSAVQIKDVTFSNIWGISSTKVALDLQC SGTLPCRNVKLIDINLSYNGPGGQAISQCSNVI |
Full Sequence |
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Protein Sequence Length: 381 Download |
VNGHSLPPKI FDVVKYGAVS DGKTDNTKAF LKAWDEACGY SGRSRVFIPN GIFLLDSVSF 60 VGPCSGPISF LVKGTIRAPT DSRRFFTDTW IGFRYVSRLT VKGGGIFDGQ GQAAWPFNDC 120 KTNDQCKPLP TTLRFDFVNN SRVLNLHSIN SKSSHVNIFA CGNFNITNVR LTAPSDSPNT 180 DGIHIGSSSQ IKITHVRIST GDDCISMVSG SQNIEIYDVS CGPGHGISIG SLGRSHEHEY 240 VKGITVRNCS FIGSDNGVRI KTWSPSLYSE ASDMTFQDIF MQNPKNPIVI DQQYCPSSHC 300 LMKSESRSAV QIKDVTFSNI WGISSTKVAL DLQCSGTLPC RNVKLIDINL SYNGPGGQAI 360 SQCSNVIGSS HGKLVPSGCL * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02155 | PLN02155 | 5.0e-92 | 10 | 380 | 373 | + polygalacturonase | ||
PLN02218 | PLN02218 | 8.0e-93 | 8 | 367 | 367 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 3.0e-94 | 38 | 366 | 329 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 1.0e-94 | 9 | 380 | 384 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 4.0e-127 | 1 | 379 | 382 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF71796.1 | 0 | 9 | 380 | 33 | 411 | AC013430_5 F3F9.9 [Arabidopsis thaliana] |
RefSeq | NP_173158.1 | 0 | 8 | 380 | 30 | 401 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_177961.2 | 0 | 9 | 380 | 33 | 403 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_180874.1 | 0 | 8 | 379 | 29 | 402 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002314146.1 | 0 | 9 | 380 | 25 | 392 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ib4_B | 4e-18 | 97 | 366 | 72 | 333 | X Chain X, The Crystal Structure Of Human Cytosolic Beta-Glucosidase |
PDB | 1ib4_A | 4e-18 | 97 | 366 | 72 | 333 | X Chain X, The Crystal Structure Of Human Cytosolic Beta-Glucosidase |
PDB | 1ia5_A | 4e-18 | 97 | 366 | 72 | 333 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
PDB | 2iq7_G | 7e-18 | 107 | 366 | 80 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 7e-18 | 107 | 366 | 80 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DY968263 | 254 | 8 | 261 | 0 |
DW145478 | 241 | 8 | 248 | 0 |
EC987202 | 278 | 11 | 287 | 0 |
CO114621 | 284 | 13 | 295 | 0 |
CU617067 | 285 | 10 | 293 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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