Basic Information | |
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Species | Mimulus guttatus |
Cazyme ID | mgv1a023303m |
Family | GH28 |
Protein Properties | Length: 390 Molecular Weight: 41771.8 Isoelectric Point: 9.0822 |
Chromosome | Chromosome/Scaffold: 97 Start: 140680 End: 143716 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 48 | 375 | 0 |
WASACASTVSSSIYVPKGRYLIRFTEFRGPCKSAIRVQIDGTLVAPIDYNALGNSGYWILFIQVNRLSVVGGSIDAKGAGLWACKKSGQNCPVGARSITF NWVNDGEISGLTSINSQLMHIVINSCKNVKVSNVRIIAPDLSPNTDGIHVRSSIGVTITNSNIKTGDDCISIGPGTRNLWMEKILCGPGHGVSIGSLGRD FNENGVENVTLVNSIFTGSDNGLRIKTWARPSNGFVRNISYRNIVMKNVENPIIIDQNYCPNNIGCPLQGSGIKISQVTYQNIQGTSATQVAMAFDCSHT NPCAGIKLKDIKLTYMNTKKAQSFCKNI |
Full Sequence |
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Protein Sequence Length: 390 Download |
MYSLSHDAVH IITRCHSGPQ GALTFNVIKF GAKPDGTTDS TRPFLSAWAS ACASTVSSSI 60 YVPKGRYLIR FTEFRGPCKS AIRVQIDGTL VAPIDYNALG NSGYWILFIQ VNRLSVVGGS 120 IDAKGAGLWA CKKSGQNCPV GARSITFNWV NDGEISGLTS INSQLMHIVI NSCKNVKVSN 180 VRIIAPDLSP NTDGIHVRSS IGVTITNSNI KTGDDCISIG PGTRNLWMEK ILCGPGHGVS 240 IGSLGRDFNE NGVENVTLVN SIFTGSDNGL RIKTWARPSN GFVRNISYRN IVMKNVENPI 300 IIDQNYCPNN IGCPLQGSGI KISQVTYQNI QGTSATQVAM AFDCSHTNPC AGIKLKDIKL 360 TYMNTKKAQS FCKNIGGTFG GVIVPDNCL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 1.0e-88 | 24 | 385 | 369 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 6.0e-95 | 52 | 375 | 330 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 2.0e-98 | 19 | 389 | 378 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 9.0e-103 | 16 | 388 | 378 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 9.0e-166 | 21 | 389 | 369 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002309713.1 | 0 | 16 | 389 | 18 | 390 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331633.1 | 0 | 2 | 389 | 4 | 390 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331634.1 | 0 | 2 | 389 | 4 | 390 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529096.1 | 0 | 22 | 389 | 22 | 388 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529098.1 | 0 | 22 | 389 | 21 | 387 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-21 | 131 | 365 | 143 | 366 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 9e-21 | 50 | 375 | 16 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 9e-21 | 50 | 375 | 16 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 9e-21 | 50 | 375 | 16 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 9e-21 | 50 | 375 | 16 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DY281549 | 317 | 23 | 337 | 0 |
JZ193571 | 288 | 22 | 308 | 0 |
JZ191937 | 300 | 90 | 389 | 0 |
FC899369 | 296 | 23 | 316 | 0 |
JZ194028 | 288 | 85 | 372 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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