Basic Information | |
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Species | Mimulus guttatus |
Cazyme ID | mgv1a023780m |
Family | GH28 |
Protein Properties | Length: 406 Molecular Weight: 43580.6 Isoelectric Point: 9.5774 |
Chromosome | Chromosome/Scaffold: 97 Start: 126844 End: 130408 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 63 | 378 | 0 |
NAACNSVVPTAVIIVPRGTFLVKSISFTGPCKSNMKLLIHGTLIAPNDYRFLGSNEFWIMFYRINGLSIFGGAIDAKGSSLWSCKSGGNNCPYGARSISF QSCNNVLVSGLKSFNSQRVHISINGCWNMFLQKMKIVAPSRSPNTDGIHIESSTGITISNSNIGTGDDCISVGPGSMKLRMDKISCGPGHGISIGSLGRN TREHGVQDVNVTNSIFVKTENGVRVKSWPRASDGYAKNLLFKNLVMKNVSNPIIIDQDYCPHQSCSPKNSGGTGSPGRFESIRGTSGAQKGGTLGWGSTN PCRGKKLKNIDLPYIN |
Full Sequence |
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Protein Sequence Length: 406 Download |
MWFGFNKILC CQGGYGNGNG CGFVESETSN RPGWGEFAYN VVDFGARGDG KTDSTSSFLK 60 AWNAACNSVV PTAVIIVPRG TFLVKSISFT GPCKSNMKLL IHGTLIAPND YRFLGSNEFW 120 IMFYRINGLS IFGGAIDAKG SSLWSCKSGG NNCPYGARSI SFQSCNNVLV SGLKSFNSQR 180 VHISINGCWN MFLQKMKIVA PSRSPNTDGI HIESSTGITI SNSNIGTGDD CISVGPGSMK 240 LRMDKISCGP GHGISIGSLG RNTREHGVQD VNVTNSIFVK TENGVRVKSW PRASDGYAKN 300 LLFKNLVMKN VSNPIIIDQD YCPHQSCSPK NSGGTGSPGR FESIRGTSGA QKGGTLGWGS 360 TNPCRGKKLK NIDLPYINHL KKPTLSDWEN PRGFCAGFVF PKGCL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 4.0e-70 | 39 | 395 | 363 | + polygalacturonase | ||
PLN02218 | PLN02218 | 7.0e-75 | 40 | 374 | 342 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 5.0e-82 | 41 | 405 | 372 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 2.0e-85 | 33 | 404 | 381 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 5.0e-119 | 39 | 405 | 368 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_181917.1 | 0 | 39 | 405 | 29 | 392 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | XP_002275740.1 | 0 | 38 | 405 | 26 | 389 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002331632.1 | 0 | 38 | 405 | 25 | 391 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331634.1 | 0 | 21 | 405 | 15 | 390 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529097.1 | 0 | 38 | 405 | 24 | 388 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2iq7_G | 4e-18 | 64 | 362 | 16 | 299 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 4e-18 | 64 | 362 | 16 | 299 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 4e-18 | 64 | 362 | 16 | 299 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 4e-18 | 64 | 362 | 16 | 299 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_C | 4e-18 | 64 | 362 | 16 | 299 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CK276500 | 273 | 37 | 309 | 0 |
JZ193571 | 286 | 39 | 323 | 0 |
DY281549 | 318 | 37 | 351 | 0 |
JZ193548 | 286 | 39 | 323 | 0 |
FC899369 | 295 | 37 | 329 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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