Basic Information | |
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Species | Mimulus guttatus |
Cazyme ID | mgv1a023900m |
Family | GH28 |
Protein Properties | Length: 238 Molecular Weight: 26600.8 Isoelectric Point: 10.2546 |
Chromosome | Chromosome/Scaffold: 97 Start: 28044 End: 29258 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 2 | 234 | 0 |
VVPKGTFLVKSISFTGPCKSNMKLLIYGTFIAPNDYRFLGSNEFWIMFYRVDGISIFGGTIDAKGSSLWFCKSRGNNCPSGARLISFQSCNNVLLRGLKS FNSQRVHISINRCWNMFLQKMKIVAPSRSPNTDGIHIESSTDHRISIGPGSMKLRVDKISCGPGHGICPGRNAREYGVQDVNVMNSIFVKTENGVRVKSW PRASDGYAKNILFKNLVMKNVSNPIIIDQEDYC |
Full Sequence |
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Protein Sequence Length: 238 Download |
MVVPKGTFLV KSISFTGPCK SNMKLLIYGT FIAPNDYRFL GSNEFWIMFY RVDGISIFGG 60 TIDAKGSSLW FCKSRGNNCP SGARLISFQS CNNVLLRGLK SFNSQRVHIS INRCWNMFLQ 120 KMKIVAPSRS PNTDGIHIES STDHRISIGP GSMKLRVDKI SCGPGHGICP GRNAREYGVQ 180 DVNVMNSIFV KTENGVRVKS WPRASDGYAK NILFKNLVMK NVSNPIIIDQ EDYCLRQS 240 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 2.0e-47 | 1 | 234 | 257 | + polygalacturonase ADPG | ||
PLN02188 | PLN02188 | 1.0e-50 | 1 | 234 | 258 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 2.0e-51 | 1 | 234 | 253 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 2.0e-52 | 1 | 234 | 256 | + Probable polygalacturonase | ||
PLN02155 | PLN02155 | 5.0e-82 | 1 | 234 | 249 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_181917.1 | 0 | 1 | 234 | 64 | 311 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | XP_002331632.1 | 0 | 3 | 234 | 63 | 308 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331633.1 | 0 | 1 | 234 | 62 | 309 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529095.1 | 0 | 3 | 234 | 63 | 308 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529096.1 | 0 | 1 | 234 | 60 | 307 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 0.000000004 | 57 | 229 | 113 | 311 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 0.00002 | 1 | 233 | 26 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 0.00002 | 1 | 233 | 26 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 0.00002 | 1 | 233 | 26 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 0.00002 | 1 | 233 | 26 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CK276500 | 233 | 3 | 220 | 0 |
JZ194307 | 250 | 1 | 234 | 0 |
JZ193671 | 250 | 1 | 234 | 0 |
JZ192910 | 250 | 1 | 234 | 0 |
JZ193571 | 250 | 1 | 234 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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