Basic Information | |
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Species | Mimulus guttatus |
Cazyme ID | mgv1a024530m |
Family | PL1 |
Protein Properties | Length: 349 Molecular Weight: 38206.1 Isoelectric Point: 8.6921 |
Chromosome | Chromosome/Scaffold: 4 Start: 2191411 End: 2192759 |
Description | root hair specific 14 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 64 | 269 | 0 |
QSKPLWITFARSMVIRLKNELMINSYKTIDGRGAKVEIAYGPCITIAHVSHVIIHGISVHDCKPGYSGVVRDSPTHAGHRRGSDGDGIDVFASTDVWIDH CFLSNCYDGLIDVIHASTGITISNNFFTNHDKVMLFGHDDSNVEDRVMKVTVVFNHFGPGLVQRMPRVRLGYAHVANNRYSQWEMYAIGGSANPTIFSEG NYFMAP |
Full Sequence |
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Protein Sequence Length: 349 Download |
MNPIDSCWRS KPNWAANRQA LADCAVGFGK NAIGGKYGAI YVVTDPSDDA ANPKPGTLRY 60 GVIQSKPLWI TFARSMVIRL KNELMINSYK TIDGRGAKVE IAYGPCITIA HVSHVIIHGI 120 SVHDCKPGYS GVVRDSPTHA GHRRGSDGDG IDVFASTDVW IDHCFLSNCY DGLIDVIHAS 180 TGITISNNFF TNHDKVMLFG HDDSNVEDRV MKVTVVFNHF GPGLVQRMPR VRLGYAHVAN 240 NRYSQWEMYA IGGSANPTIF SEGNYFMAPN RAEIKQVTKR EVKNGWQNWK WRTSRDRFMN 300 GAYFVTSGYG TTATGYTKTQ SFQVADGSMV PALTSDAGPL TCAGNGSC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 2.0e-27 | 81 | 267 | 199 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 2.0e-64 | 81 | 266 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 4.0e-77 | 76 | 270 | 206 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_172656.1 | 0 | 2 | 348 | 37 | 384 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | NP_193939.1 | 0 | 1 | 348 | 46 | 393 | pectate lyase family protein [Arabidopsis thaliana] |
Swiss-Prot | O65388 | 0 | 2 | 348 | 37 | 390 | PEL2_ARATH RecName: Full=Putative pectate lyase 2; Flags: Precursor |
RefSeq | XP_002263615.1 | 0 | 1 | 348 | 50 | 397 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002518442.1 | 0 | 1 | 348 | 43 | 390 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 2 | 341 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 2 | 341 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 6e-19 | 75 | 267 | 55 | 247 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.00000000000001 | 94 | 266 | 140 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pcl_A | 0.0000000000001 | 79 | 274 | 71 | 284 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FG606120 | 307 | 2 | 305 | 0 |
DY278910 | 281 | 2 | 281 | 0 |
HO778688 | 351 | 2 | 349 | 0 |
CO097456 | 280 | 2 | 280 | 0 |
GT740031 | 299 | 11 | 305 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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