Basic Information | |
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Species | Mimulus guttatus |
Cazyme ID | mgv1a024920m |
Family | GH28 |
Protein Properties | Length: 483 Molecular Weight: 52289.4 Isoelectric Point: 6.7787 |
Chromosome | Chromosome/Scaffold: 59 Start: 189941 End: 192971 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 111 | 442 | 0 |
GGGAQLNVPRGRWLTGSFNLTSDFTLFLDDGALILGSQEPEEWPIIEPLPSYGRGREREGGRHISLIHGNSLTNVVITGNNGTIDGQGKMWWDLWWNKTL IHTRGHLVELINSHNVLISNLTFRNSPFWTVHPVYCSNVVIKDMTILAPLNAPNTDGIDPDSSTNICIEDCYIESGDDLVAIKSGWDQYGITMSKPSANI TVRRVSGTTPTCSGIGIGSEMSGGIKNVLIEDLYVRDSASGVRIKTDRGRGGYITNITIRNIMMERVKVPIRFSRGADDHPDEKWDVKALPKVRGIFISN VVSLESRKGPLLEGVEGAIFEDICMKNVSLFG |
Full Sequence |
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Protein Sequence Length: 483 Download |
MEGENPLLTA VKSSLTRPSW AFLLLIFAGV AVFSLQFTGN TAPPPFGSIS NRAGHTGSGG 60 PTTCSGLFEA PPPRRVVKSI EEFGGVGDGT TSNTAAFKRA VEYMAKFRGG GGGAQLNVPR 120 GRWLTGSFNL TSDFTLFLDD GALILGSQEP EEWPIIEPLP SYGRGREREG GRHISLIHGN 180 SLTNVVITGN NGTIDGQGKM WWDLWWNKTL IHTRGHLVEL INSHNVLISN LTFRNSPFWT 240 VHPVYCSNVV IKDMTILAPL NAPNTDGIDP DSSTNICIED CYIESGDDLV AIKSGWDQYG 300 ITMSKPSANI TVRRVSGTTP TCSGIGIGSE MSGGIKNVLI EDLYVRDSAS GVRIKTDRGR 360 GGYITNITIR NIMMERVKVP IRFSRGADDH PDEKWDVKAL PKVRGIFISN VVSLESRKGP 420 LLEGVEGAIF EDICMKNVSL FGLGLSAMRW HCEFVSGFSD DVSPMPCLEL RKNGSSSSCS 480 FP* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 3.0e-18 | 177 | 381 | 212 | + polygalacturonase | ||
PLN02218 | PLN02218 | 1.0e-21 | 79 | 381 | 314 | + polygalacturonase ADPG | ||
PLN03003 | PLN03003 | 1.0e-25 | 80 | 478 | 420 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 1.0e-30 | 177 | 381 | 208 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 2.0e-48 | 79 | 412 | 373 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN76963.1 | 0 | 63 | 476 | 51 | 462 | hypothetical protein [Vitis vinifera] |
EMBL | CBI37530.1 | 0 | 63 | 479 | 62 | 476 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002274138.1 | 0 | 1 | 479 | 1 | 476 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002310517.1 | 0 | 62 | 481 | 19 | 436 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002526639.1 | 0 | 58 | 481 | 55 | 479 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 2.94273e-44 | 72 | 448 | 24 | 418 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 2.94273e-44 | 72 | 448 | 24 | 418 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 2.94273e-44 | 72 | 448 | 24 | 418 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 2.94273e-44 | 72 | 448 | 24 | 418 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 1e-22 | 123 | 440 | 52 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |