y
Basic Information | |
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Species | Mimulus guttatus |
Cazyme ID | mgv1a025252m |
Family | GH28 |
Protein Properties | Length: 398 Molecular Weight: 41897.8 Isoelectric Point: 6.556 |
Chromosome | Chromosome/Scaffold: 5 Start: 534799 End: 536944 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 53 | 380 | 0 |
NAACEANGAAMVVPAGYTFLLQPITLNGNSCQSKIVVQIDGKIVAPNKSQWSSNGFQWILFSQMGKGIIIQGNGMIDGSGDSWWSSGDTPHKTFEVQALR IVDSSDVAILGIKVQNAHRMHIYIDNCQSVTIFNVTISSPGDSPNTDGVHLTHAQHVEIYSSNIAYGDDCVSIQTGTSDVKIHNVNCGPGHGFSIGGLGP DKSEAHVSDINVYDSTLSDALYGVRIKTWQDGTGSVNNVTLSGITVSNVHNPIIIDQNYCNGAHGCSGTTTNAVAISSVTYKGITGTYTVTPVSLDCSQY KACSDLTVSSINLTPSGSAKPDVVCNNA |
Full Sequence |
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Protein Sequence Length: 398 Download |
NAICYGRKGN YLSHVTSSPV KYSMKALVFD VRNYGAKGDG STNDAAAFQA AWNAACEANG 60 AAMVVPAGYT FLLQPITLNG NSCQSKIVVQ IDGKIVAPNK SQWSSNGFQW ILFSQMGKGI 120 IIQGNGMIDG SGDSWWSSGD TPHKTFEVQA LRIVDSSDVA ILGIKVQNAH RMHIYIDNCQ 180 SVTIFNVTIS SPGDSPNTDG VHLTHAQHVE IYSSNIAYGD DCVSIQTGTS DVKIHNVNCG 240 PGHGFSIGGL GPDKSEAHVS DINVYDSTLS DALYGVRIKT WQDGTGSVNN VTLSGITVSN 300 VHNPIIIDQN YCNGAHGCSG TTTNAVAISS VTYKGITGTY TVTPVSLDCS QYKACSDLTV 360 SSINLTPSGS AKPDVVCNNA FGHVLTPTTP SLTNCLK* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 1.0e-60 | 29 | 397 | 375 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 3.0e-61 | 31 | 365 | 344 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 3.0e-66 | 63 | 380 | 322 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 5.0e-68 | 12 | 391 | 388 | + Probable polygalacturonase | ||
PLN03010 | PLN03010 | 1.0e-68 | 29 | 382 | 359 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAD46483.1 | 0 | 20 | 397 | 37 | 426 | polygalacturonase PG1 [Glycine max] |
GenBank | ABV24998.1 | 0 | 28 | 392 | 87 | 462 | polygalacturonase 1 [Oncidium Gower Ramsey] |
GenBank | ABV24999.1 | 0 | 28 | 392 | 88 | 463 | polygalacturonase 2 [Oncidium Gower Ramsey] |
GenBank | ABV25000.1 | 0 | 28 | 397 | 88 | 467 | polygalacturonase 3 [Oncidium Gower Ramsey] |
DDBJ | BAB20805.2 | 0 | 18 | 396 | 52 | 424 | polygalacturonase [Zinnia elegans] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2iq7_G | 1e-25 | 42 | 379 | 6 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 1e-25 | 42 | 379 | 6 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 1e-25 | 42 | 379 | 6 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 1e-25 | 42 | 379 | 6 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_C | 1e-25 | 42 | 379 | 6 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GO844129 | 335 | 36 | 355 | 0 |
ES800057 | 332 | 67 | 365 | 0 |
CO731672 | 251 | 150 | 397 | 0 |
DR581859 | 243 | 150 | 392 | 0 |
CO212200 | 234 | 159 | 392 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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