| Basic Information | |
|---|---|
| Species | Mimulus guttatus |
| Cazyme ID | mgv1a025746m |
| Family | PL4 |
| Protein Properties | Length: 380 Molecular Weight: 43206.7 Isoelectric Point: 6.9023 |
| Chromosome | Chromosome/Scaffold: 1520 Start: 48 End: 2069 |
| Description | Rhamnogalacturonate lyase family protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL4 | 1 | 362 | 0 |
| YFTSTHYSGEVLAIKFKTEEYWKKVIGPVYIYLNSNDSANADPSILWIDAKQRMQKEEASWPYEFPLSEDFVKSNQRGALSGQLLVRDWFVNKQAVPGAS AYVGLAPPGEVGSWQYENKGYQFWNKTDENGNFSIKNVIPGNYSLFAWVPGFIGDYKHVSDITITPGSNIQATNIVFDAPRNGPTLWEIGIPDRSAAEFF IPNPDPTIKVHQYAKPVEKFRQYGLWAGYEEMYPRKDLVFTIGSSNYSKDWFFSQVTRNVGGEYVGTTWQILFDLKNVEKEGNYTLQLALASAHYAELQV RFNDRNSPPEFTTGTIGMDNALARHGIRGVYHYYGIPIPGSRLFVGRNTLFLTQARNLTKFR | |||
| Full Sequence |
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| Protein Sequence Length: 380 Download |
| YFTSTHYSGE VLAIKFKTEE YWKKVIGPVY IYLNSNDSAN ADPSILWIDA KQRMQKEEAS 60 WPYEFPLSED FVKSNQRGAL SGQLLVRDWF VNKQAVPGAS AYVGLAPPGE VGSWQYENKG 120 YQFWNKTDEN GNFSIKNVIP GNYSLFAWVP GFIGDYKHVS DITITPGSNI QATNIVFDAP 180 RNGPTLWEIG IPDRSAAEFF IPNPDPTIKV HQYAKPVEKF RQYGLWAGYE EMYPRKDLVF 240 TIGSSNYSKD WFFSQVTRNV GGEYVGTTWQ ILFDLKNVEK EGNYTLQLAL ASAHYAELQV 300 RFNDRNSPPE FTTGTIGMDN ALARHGIRGV YHYYGIPIPG SRLFVGRNTL FLTQARNLTK 360 FREIMYDYIR LEGPPAIVH* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd10320 | RGL4_N | 0.0002 | 1 | 42 | 42 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| pfam13620 | CarboxypepD_reg | 5.0e-6 | 79 | 169 | 91 | + Carboxypeptidase regulatory-like domain. | ||
| cd10316 | RGL4_M | 3.0e-31 | 76 | 175 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10317 | RGL4_C | 2.0e-44 | 187 | 372 | 188 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_172462.2 | 0 | 2 | 376 | 301 | 675 | lyase [Arabidopsis thaliana] |
| RefSeq | XP_002306520.1 | 0 | 2 | 375 | 242 | 616 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002308510.1 | 0 | 2 | 374 | 298 | 671 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002527245.1 | 0 | 2 | 374 | 243 | 618 | lyase, putative [Ricinus communis] |
| RefSeq | XP_002527356.1 | 0 | 2 | 375 | 374 | 747 | lyase, putative [Ricinus communis] |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| GR187349 | 258 | 115 | 371 | 0 |
| GO374104 | 313 | 69 | 374 | 0 |
| DY969340 | 294 | 2 | 293 | 0 |
| DY922281 | 283 | 11 | 291 | 0 |
| EH792178 | 289 | 48 | 331 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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