Basic Information | |
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Species | Mimulus guttatus |
Cazyme ID | mgv1a026431m |
Family | GH28 |
Protein Properties | Length: 400 Molecular Weight: 43249.6 Isoelectric Point: 4.9658 |
Chromosome | Chromosome/Scaffold: 20 Start: 384146 End: 386079 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 55 | 386 | 0 |
KEACATNGGVVSIPNGIFFLRGAVFEGPCNGETYFMIKGTLIASDDASLDEDYWILFHKVDGLTIFGNGTFDGNGAKAWSYNTCDRSTSCKRPPSSIKLN TLRNTVVREINLLNSKMFHLTINECDNLSANSIDIRAPADSPNTDGIHIARSNNVRVTDSRISTGDDCVSMGDGNTNVNITKIWCGPGHGISIGSLGKYK EEKDVSGIFVDNCTFTKTNNGLRIKTWAPSTVSTIVSDVTFSNILVDDVENPIVIDQYYCPNNLCSHQGESDIEISGVKFVNIKGSSESKVAVDVQCSKK KPCKNIEFVALNLTTKATGQPTTASCSNADHK |
Full Sequence |
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Protein Sequence Length: 400 Download |
MDFKFAYSSL FASVFWFLCV ISYANGENEI FEITDYGAVS GGKTDSTNAL MSAWKEACAT 60 NGGVVSIPNG IFFLRGAVFE GPCNGETYFM IKGTLIASDD ASLDEDYWIL FHKVDGLTIF 120 GNGTFDGNGA KAWSYNTCDR STSCKRPPSS IKLNTLRNTV VREINLLNSK MFHLTINECD 180 NLSANSIDIR APADSPNTDG IHIARSNNVR VTDSRISTGD DCVSMGDGNT NVNITKIWCG 240 PGHGISIGSL GKYKEEKDVS GIFVDNCTFT KTNNGLRIKT WAPSTVSTIV SDVTFSNILV 300 DDVENPIVID QYYCPNNLCS HQGESDIEIS GVKFVNIKGS SESKVAVDVQ CSKKKPCKNI 360 EFVALNLTTK ATGQPTTASC SNADHKFIDP SVQVPSMCS* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 1.0e-82 | 30 | 383 | 363 | + Probable polygalacturonase | ||
PLN02155 | PLN02155 | 6.0e-84 | 11 | 383 | 378 | + polygalacturonase | ||
PLN02218 | PLN02218 | 5.0e-86 | 33 | 384 | 360 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 9.0e-96 | 64 | 383 | 320 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 3.0e-124 | 10 | 398 | 399 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABY21306.1 | 0 | 31 | 397 | 11 | 375 | pollen allergen Pla o 2 [Platanus orientalis] |
Swiss-Prot | Q6H9K0 | 0 | 30 | 397 | 9 | 374 | PGLR2_PLAAC RecName: Full=Exopolygalacturonase; AltName: Full=Pollen allergen Pla a 2; AltName: Allergen=Pla a 2; Flags: Precursor |
RefSeq | XP_002272193.1 | 0 | 30 | 398 | 55 | 426 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002273801.1 | 0 | 1 | 398 | 1 | 395 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002312795.1 | 0 | 21 | 399 | 32 | 410 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 5e-23 | 63 | 374 | 55 | 368 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 2e-16 | 145 | 382 | 97 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 2e-16 | 145 | 382 | 97 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 2e-16 | 145 | 382 | 97 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 2e-16 | 145 | 382 | 97 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |