Basic Information | |
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Species | Mimulus guttatus |
Cazyme ID | mgv1a026845m |
Family | GH28 |
Protein Properties | Length: 384 Molecular Weight: 41919 Isoelectric Point: 5.0487 |
Chromosome | Chromosome/Scaffold: 63 Start: 205517 End: 208094 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 38 | 369 | 0 |
EFPKIYVPEESTFLVNPISFYGPCNSPTINFKISGTIIAPESPDVWNGRDASQWLGFEHVDGLKIDGYGVFDGRGQPWWDQSCRYHPQLKQCTKTAPTAL KFLWCKESSVRNMKLMNSAQTHILVKDCNNFKIENLMINSPGNSPNTDGIHIQASHSVTITNSQIACGDDCISIGDYISNVQIANVVCGPGHGISIGSLG KGGNYVQVENIRVTDAFFNGTTNGARIKTWQVGRGYVRNVVFENLKFNNVKNPIIIDQNYCFVRDACKEEETGVQVSSVVYKEISGTSTTDIAINLNCSN AVPCFGISMQSINIDSAKSGKQVTAHCNNAHG |
Full Sequence |
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Protein Sequence Length: 384 Download |
EDEDVFNVMD YGATGDGLTD DSQAFLEAWE AACNALVEFP KIYVPEESTF LVNPISFYGP 60 CNSPTINFKI SGTIIAPESP DVWNGRDASQ WLGFEHVDGL KIDGYGVFDG RGQPWWDQSC 120 RYHPQLKQCT KTAPTALKFL WCKESSVRNM KLMNSAQTHI LVKDCNNFKI ENLMINSPGN 180 SPNTDGIHIQ ASHSVTITNS QIACGDDCIS IGDYISNVQI ANVVCGPGHG ISIGSLGKGG 240 NYVQVENIRV TDAFFNGTTN GARIKTWQVG RGYVRNVVFE NLKFNNVKNP IIIDQNYCFV 300 RDACKEEETG VQVSSVVYKE ISGTSTTDIA INLNCSNAVP CFGISMQSIN IDSAKSGKQV 360 TAHCNNAHGR EVGVFPGPCL QHY* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 8.0e-94 | 4 | 381 | 383 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 3.0e-94 | 6 | 369 | 364 | + polygalacturonase | ||
PLN02188 | PLN02188 | 8.0e-102 | 6 | 379 | 378 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02218 | PLN02218 | 7.0e-108 | 7 | 376 | 375 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 3.0e-125 | 3 | 380 | 379 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF61444.1 | 0 | 1 | 380 | 58 | 433 | AF138858_1 polygalacturonase [Solanum lycopersicum] |
DDBJ | BAC57279.1 | 0 | 3 | 379 | 50 | 423 | putative polygalacturonase PG1 [Oryza sativa Japonica Group] |
GenBank | EEC81719.1 | 0 | 5 | 379 | 52 | 423 | hypothetical protein OsI_25337 [Oryza sativa Indica Group] |
RefSeq | NP_565232.1 | 0 | 1 | 380 | 48 | 424 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | XP_002313308.1 | 0 | 5 | 376 | 8 | 373 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 1e-27 | 102 | 353 | 113 | 363 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 4e-16 | 107 | 324 | 79 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 4e-16 | 107 | 324 | 79 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 4e-16 | 107 | 324 | 79 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 4e-16 | 107 | 324 | 79 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DT769247 | 251 | 6 | 255 | 0 |
DT769246 | 264 | 129 | 380 | 0 |
GO844129 | 337 | 13 | 341 | 0 |
DY281549 | 324 | 6 | 328 | 0 |
DT768233 | 231 | 6 | 235 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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