Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna00093.1-v1.0-hybrid |
Family | CE8 |
Protein Properties | Length: 454 Molecular Weight: 49905.8 Isoelectric Point: 7.4227 |
Chromosome | Chromosome/Scaffold: 6 Start: 10002550 End: 10004522 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 104 | 427 | 0 |
TVGLNGCTNFSSVQKAVDAAPELSTNRTLIIIDAGTYREKVTVNASKTNLIFQGQGYLNTAIAWNDSANSSGGTGRSASVSIFAPSFTAYNISFKKNTAP PPSEGRIGAQAVALRVTGDQAAFYGCGFYGAQDTLNDDRGRHYFRECFIQGSIDFIFGSARSLYEGCTINSIANPVKDGILLKGRISGAITAQGRKSMQE QSGYSFVNCSIGGSGKVWLGRAWGAYATVVFSRTYMSDVVASDGWNDWSDSSRDEYVVAPLTATFSSPSVWLVQFEDKTSFVWKVFYGEYECTGPGANNT NRVSYSKQLNESEAAPFLDVSYID |
Full Sequence |
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Protein Sequence Length: 454 Download |
MRTKTTLFFW LSAFAIALVS ITFALHSFSS LPSTSVFSDY VQSGFNVASF DGFFKQSGET 60 LLSIVRSIVS RVSRHHQQQQ RINCDVKIWK SRLISEFNVL LVLTVGLNGC TNFSSVQKAV 120 DAAPELSTNR TLIIIDAGTY REKVTVNASK TNLIFQGQGY LNTAIAWNDS ANSSGGTGRS 180 ASVSIFAPSF TAYNISFKKN TAPPPSEGRI GAQAVALRVT GDQAAFYGCG FYGAQDTLND 240 DRGRHYFREC FIQGSIDFIF GSARSLYEGC TINSIANPVK DGILLKGRIS GAITAQGRKS 300 MQEQSGYSFV NCSIGGSGKV WLGRAWGAYA TVVFSRTYMS DVVASDGWND WSDSSRDEYV 360 VAPLTATFSS PSVWLVQFED KTSFVWKVFY GEYECTGPGA NNTNRVSYSK QLNESEAAPF 420 LDVSYIDGGI WLSYTPLFNL HEDYYNDHFT YTY* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02432 | PLN02432 | 2.0e-83 | 112 | 432 | 321 | + putative pectinesterase | ||
PLN02634 | PLN02634 | 7.0e-94 | 112 | 433 | 328 | + probable pectinesterase | ||
PLN02665 | PLN02665 | 5.0e-95 | 112 | 438 | 328 | + pectinesterase family protein | ||
PLN02682 | PLN02682 | 9.0e-114 | 112 | 432 | 327 | + pectinesterase family protein | ||
PLN02304 | PLN02304 | 5.0e-140 | 110 | 432 | 323 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 1e-38 | 103 | 435 | 9 | 311 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 1e-34 | 105 | 435 | 7 | 307 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 0.000000000000009 | 113 | 272 | 44 | 217 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_B | 0.00000000000006 | 113 | 341 | 18 | 258 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_A | 0.00000000000006 | 113 | 341 | 18 | 258 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |