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Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna00293.1-v1.0-hybrid |
Family | GH28 |
Protein Properties | Length: 460 Molecular Weight: 50152.4 Isoelectric Point: 8.0021 |
Chromosome | Chromosome/Scaffold: 6 Start: 3675607 End: 3677901 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 88 | 416 | 0 |
DSACQTENSEVLVPKSRSYMLQSTIFTGPCKSGLKLQIDGTLVPPDGPDSWPKKISKRQWLVFYRINGMSMQGDGVIDGRGEKWWNLPCKPHKGPHGTTL PGPCDSPTAIRFFMCSNLKLKGLRIKNSPQFHFKFDNCQNVYVESLTIKSPALSPNTDGIHIQNTNNMKIYNSLVSNGDDCVSIGTGSYNIDIRNITCGP SHGISIGSLGDGNSRACVSNITVKDSIIKHSDNGVRIKTWQGGSGSVSSITFNNIHMDTVRNPIVLDQYYCLTKHCPNQTSAVHISNILYTNIRGTYDVR SPPMHFACSDSMPCTNLTLSEVELLPATK |
Full Sequence |
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Protein Sequence Length: 460 Download |
MLINFVLAHI FNFFLCFLFL PIHGRLHYTS SLVVSQISVP PSPAPAAAVS PTYNGSSALG 60 TTVFNVRTFG AVGNGVTDDT EAFKMAWDSA CQTENSEVLV PKSRSYMLQS TIFTGPCKSG 120 LKLQIDGTLV PPDGPDSWPK KISKRQWLVF YRINGMSMQG DGVIDGRGEK WWNLPCKPHK 180 GPHGTTLPGP CDSPTAIRFF MCSNLKLKGL RIKNSPQFHF KFDNCQNVYV ESLTIKSPAL 240 SPNTDGIHIQ NTNNMKIYNS LVSNGDDCVS IGTGSYNIDI RNITCGPSHG ISIGSLGDGN 300 SRACVSNITV KDSIIKHSDN GVRIKTWQGG SGSVSSITFN NIHMDTVRNP IVLDQYYCLT 360 KHCPNQTSAV HISNILYTNI RGTYDVRSPP MHFACSDSMP CTNLTLSEVE LLPATKGHLV 420 PIPLCWSAYG TMQTITVPPV LCLLEGIPEL MPQNDSDRC* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 7.0e-80 | 64 | 411 | 352 | + polygalacturonase | ||
PLN03003 | PLN03003 | 8.0e-87 | 61 | 443 | 389 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 9.0e-97 | 96 | 411 | 317 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 3.0e-106 | 62 | 411 | 354 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 3.0e-125 | 63 | 439 | 380 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 1e-26 | 121 | 411 | 36 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 1e-26 | 121 | 411 | 36 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 1e-26 | 121 | 411 | 36 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 1e-26 | 121 | 411 | 36 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 1e-26 | 121 | 411 | 36 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |