Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna00430.1-v1.0-hybrid |
Family | GH28 |
Protein Properties | Length: 1534 Molecular Weight: 169170 Isoelectric Point: 5.8986 |
Chromosome | Chromosome/Scaffold: 7 Start: 13010309 End: 13017222 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 1189 | 1520 | 0 |
VCGSTQGIPTLIIPKGKDFLLNSVKFQGPCRAASVNFQLNGSIVAKKDMTAWRDKDKWVQFDNVQGLIINGGGQIDGQGLVWWRACSTTNCKRPTALHIN DCHGLRLSDITHIDSARNHISISGCNDVEVSGILIRAPADSPNTDGIDISTSTNINIRDSSIGTGDDCIAINSGTSHVNVTGVLCGPGHGISIGSLGEHG SYSMVEDVQVRKCTFNGTTNGARIKTWKGGSGYARDIIFENITIQAIKNPIIIDQEYSDVLYTGFGTLHDQGSAVQVSDVTFRDFQGSVSGDVAITLDCD NRVGCKNIVMDHIDLTSSVHGKKVAAYCKNVR |
Full Sequence |
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Protein Sequence Length: 1534 Download |
MASHGFDPGN PIKWYQSPHL GLIPAGYGGG VAGNCYDHSL VEASYYPVTN YTPPLHFTQP 60 NCYPPLHHFT PPSPYLPPLH FTQPNPYPPP QNFSQPNYPP PQLTQPNSYP PPQNNHSATL 120 INGHWLPLRF PCVSQAHTQD YPCPHLQPTH TIPPNTTYEP PPPIAPGSQL CSLPLQLGGV 180 SESEVSIVDS GRPSLNYPDA KLSEFIESMS KSFDTCISKC IERLQLFEGF SPTHKPKFQS 240 SAPKISSPQL PQPTSKLSPL LDGAQSVNLL MPSLSTSRNK RVTLKSTAAI GGVKKRRLFR 300 PGTIVPRETG KYQRCNKPPF KSSVVPSTLE NTVLAHWISS TVWAQSNNTP ASSCSVSDTG 360 TSNSDFNFVS IDCDSVDSML FAKLNENENL ENVEEGIFDK RIMVNNGDDY ELSELKGIGV 420 HQENQGPKSC VKGRESQTLH LFDEMPKSED VRNDEVVKDA YSYPKKAGYN PHKIDFVPIS 480 GSEDETLIER YTNFDWYKAT TLLETHPCDV GLNMNNLAVK DLKHGFVASN SQDDTTKNTT 540 NFTSQIIIMN HPKLYSSKKE HSDGYDGNEN DVKKDLKSSQ SSHFSGGTVV FSDMHDLEAS 600 LQSNVFSSKS FLVVKDLDLK ESITIFNEQI IRPPDDIEVD DHKCAFYRIF FEFLIAFFEC 660 TMEKELSVNF HDNHMKVVEK CLGYAMSPLD ALNTVQKLGF KMDYQNLYQL LSSLSKLEGD 720 LEDRVTNTSM ERMTEFSNTL QLHSSIKAYE IDCSITLKFM LLLPFKPVQL RCLAVAQDEL 780 KGAGVLDMIV SMRKITVSCA ITLVEIKCSN NSNLSKTNEI WAAFANISWE EADLASEENE 840 QLLFLNVIFQ FIEAIWTSKL KGKSLCIIGD IQGVTQNGMN LFASSNLTHV HQYNGFPALC 900 ESGSNEVKEM IAHSIQESMH TETNDIVVSM EEQISTSTRL PCSATDVVLR VEAMLDEKRD 960 CHGIELGNAG ELVSQPQKIS KLDLQRHYYG IQPLSPPRAG PKALSAFICP QPKPAFIATQ 1020 SNISASQSQF VKPQLITSPS PLPVSTYPQL QQALIKRVEA LPTLGVWLVT STPDRYMMDL 1080 CHLLDMLSRF GKTFSGLRSS LFFERVEIDQ GADKTSNSFK EEYGVVVATT SDKYYHALPN 1140 RQTDDDLQAF PEEAWRSPAT STFNVMNYGA VGNGEVDDTQ AFLKAWGDVC GSTQGIPTLI 1200 IPKGKDFLLN SVKFQGPCRA ASVNFQLNGS IVAKKDMTAW RDKDKWVQFD NVQGLIINGG 1260 GQIDGQGLVW WRACSTTNCK RPTALHINDC HGLRLSDITH IDSARNHISI SGCNDVEVSG 1320 ILIRAPADSP NTDGIDISTS TNINIRDSSI GTGDDCIAIN SGTSHVNVTG VLCGPGHGIS 1380 IGSLGEHGSY SMVEDVQVRK CTFNGTTNGA RIKTWKGGSG YARDIIFENI TIQAIKNPII 1440 IDQEYSDVLY TGFGTLHDQG SAVQVSDVTF RDFQGSVSGD VAITLDCDNR VGCKNIVMDH 1500 IDLTSSVHGK KVAAYCKNVR GLRTSLSPSV TCD* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 1.0e-84 | 1159 | 1520 | 368 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02793 | PLN02793 | 5.0e-85 | 1163 | 1533 | 381 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 1.0e-91 | 1138 | 1518 | 388 | + polygalacturonase ADPG | ||
PLN03003 | PLN03003 | 5.0e-98 | 1160 | 1532 | 378 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 8.0e-114 | 1163 | 1521 | 362 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 1e-23 | 1257 | 1505 | 113 | 363 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1czf_B | 2e-20 | 1263 | 1518 | 107 | 355 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1czf_A | 2e-20 | 1263 | 1518 | 107 | 355 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1nhc_F | 2e-19 | 1260 | 1519 | 77 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 2e-19 | 1260 | 1519 | 77 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Sequence Alignments (This image is cropped. Click for full image.) |
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