| Basic Information | |
|---|---|
| Species | Fragaria vesca |
| Cazyme ID | mrna00558.1-v1.0-hybrid |
| Family | GH28 |
| Protein Properties | Length: 548 Molecular Weight: 60645.6 Isoelectric Point: 5.6664 |
| Chromosome | Chromosome/Scaffold: 6 Start: 19865353 End: 19868034 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH28 | 145 | 472 | 0 |
| TSTSTCHVTFPRGGTYLTATIRLKSGVVLNIEDGATLLGGTRLGDYPVEQERWYVVVAENATDVGITGGGVVDGQGLEFVKRFDEKKNVMVSWNSTGACL GDECRPRLVGFIDSKNVKLSDIQLRQPAYWCLHIVRCEHVTIQDVSIYGDFNTPNNDGIDIEDSNNTVITRCHIDTGDDAICPKTYTGPLYNLTVTNCWI RTKSSAIKLGSASWFDFKGLVFDNITIADSHRGLGFQIRDGGNVSDVIFSNINIRTRYYDPSWWGRAEPIYVTTCPRDSYSKEGSISNILFVNISANSEN GVFLSGSKHGLLSDLRFINLNLTFRRRT | |||
| Full Sequence |
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| Protein Sequence Length: 548 Download |
| MLGDAAAVFS GGKKLESESL REMETLGEPE TVRIRTDYLL FQNLMLTLTR QKDFTPFFLP 60 STRVDLKRTE APSIQMALLL LLQSATLFFP FLLTLLQSTS ATSPSIALPQ NLTPTLSVTD 120 FGATGDGVTY DTFAIQSAID SCSSTSTSTC HVTFPRGGTY LTATIRLKSG VVLNIEDGAT 180 LLGGTRLGDY PVEQERWYVV VAENATDVGI TGGGVVDGQG LEFVKRFDEK KNVMVSWNST 240 GACLGDECRP RLVGFIDSKN VKLSDIQLRQ PAYWCLHIVR CEHVTIQDVS IYGDFNTPNN 300 DGIDIEDSNN TVITRCHIDT GDDAICPKTY TGPLYNLTVT NCWIRTKSSA IKLGSASWFD 360 FKGLVFDNIT IADSHRGLGF QIRDGGNVSD VIFSNINIRT RYYDPSWWGR AEPIYVTTCP 420 RDSYSKEGSI SNILFVNISA NSENGVFLSG SKHGLLSDLR FINLNLTFRR RTNNVGGLVD 480 YRPGCQGLVK HSIAGFILEH INGLVFDSVY MRWSDEQIRQ WNNPMDFRSA TVNNISLLNF 540 HSSLYTQ* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam12708 | Pectate_lyase_3 | 1.0e-8 | 117 | 173 | 58 | + Pectate lyase superfamily protein. This family of proteins possesses a beta helical structure like Pectate lyase. This family is most closely related to glycosyl hydrolase family 28. | ||
| PLN03003 | PLN03003 | 8.0e-11 | 116 | 395 | 336 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 8.0e-12 | 250 | 452 | 218 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 3.0e-14 | 115 | 452 | 369 | + polygalacturonase ADPG | ||
| COG5434 | PGU1 | 5.0e-37 | 116 | 399 | 318 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2uvf_B | 2e-18 | 96 | 399 | 141 | 488 | A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1), Apo Form |
| PDB | 2uvf_A | 2e-18 | 96 | 399 | 141 | 488 | A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1), Apo Form |
| PDB | 2uve_B | 2e-18 | 96 | 399 | 141 | 488 | A Chain A, Structure Of Yersinia Enterocolitica Family 28 Exopolygalacturonase |
| PDB | 2uve_A | 2e-18 | 96 | 399 | 141 | 488 | A Chain A, Structure Of Yersinia Enterocolitica Family 28 Exopolygalacturonase |
| PDB | 3jur_D | 1e-16 | 109 | 395 | 21 | 316 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| Hydropathy |
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| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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