Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna01127.1-v1.0-hybrid |
Family | GH28 |
Protein Properties | Length: 395 Molecular Weight: 42223.1 Isoelectric Point: 8.2096 |
Chromosome | Chromosome/Scaffold: 6 Start: 31174248 End: 31175875 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 46 | 380 | 0 |
WSDACASTSPSRIIVPKGTFQLKGASFKGPCKGPIEFQVDGTLQAPQDGAQLIKADTWIEFANLERLTLMGTGTFDGQGQKAWKENDCNKNPKCSSIAIN LRFNSVKHSLVKDVTSLNSKNFHVNVLGCEQLTFQHFTVKAPGDSINTDGIHIGRSTGINITDTNIGTGDDCISIGDGTKQLTINKVTCGPGHGISIGSL GRYNNEDHVTGINVKDCTISNTMNGVRIKTWPNSPIATTASDIHFEHITMNNVGNPILIDQEYCPYGQCNTQTPSKVKISNVSFKNIRGTTTTAEAVKIV CAKGLPCDKVVLSDIDLKLTGKGTLTSQCANVQPT |
Full Sequence |
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Protein Sequence Length: 395 Download |
MGHNLVMSIF PIFLLLSIAY ADFDVTSSKY GGKPNSDISQ PLAKAWSDAC ASTSPSRIIV 60 PKGTFQLKGA SFKGPCKGPI EFQVDGTLQA PQDGAQLIKA DTWIEFANLE RLTLMGTGTF 120 DGQGQKAWKE NDCNKNPKCS SIAINLRFNS VKHSLVKDVT SLNSKNFHVN VLGCEQLTFQ 180 HFTVKAPGDS INTDGIHIGR STGINITDTN IGTGDDCISI GDGTKQLTIN KVTCGPGHGI 240 SIGSLGRYNN EDHVTGINVK DCTISNTMNG VRIKTWPNSP IATTASDIHF EHITMNNVGN 300 PILIDQEYCP YGQCNTQTPS KVKISNVSFK NIRGTTTTAE AVKIVCAKGL PCDKVVLSDI 360 DLKLTGKGTL TSQCANVQPT ITQVPQALAC ATKK* |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
PLN02218 | PLN02218 | 9.0e-75 | 25 | 386 | 369 | + polygalacturonase ADPG |
PLN02793 | PLN02793 | 3.0e-78 | 28 | 374 | 355 | + Probable polygalacturonase |
PLN02155 | PLN02155 | 2.0e-80 | 23 | 393 | 373 | + polygalacturonase |
pfam00295 | Glyco_hydro_28 | 2.0e-109 | 50 | 377 | 328 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
PLN02188 | PLN02188 | 1.0e-120 | 23 | 385 | 368 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 3e-19 | 101 | 378 | 100 | 375 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 5e-18 | 104 | 390 | 63 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 5e-18 | 104 | 390 | 63 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 5e-18 | 104 | 390 | 63 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 5e-18 | 104 | 390 | 63 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |