Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna01266.1-v1.0-hybrid |
Family | PL1 |
Protein Properties | Length: 448 Molecular Weight: 50065.2 Isoelectric Point: 8.9003 |
Chromosome | Chromosome/Scaffold: 6 Start: 1667003 End: 1668708 |
Description | Pectate lyase family protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 156 | 363 | 0 |
AVIQTGPLWIIFKHSMTIKLNKELIMTSHKTIDGRGANVHIAHGAGITIQFVENVIIHGIHIHDIVSVGGGLIRDSLDHIGLRGQSDGDGITVFGSSHIW LDHLSMWNCYDGLTDVVQGSTAITISNCHFTRHNDVMLFGANDLYERDQIMQITVAFNHFGKGLIQRMPRCRFGFFHVVNNDYTHWQMYAIGGSSHPTII SQGNRYVA |
Full Sequence |
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Protein Sequence Length: 448 Download |
MVSMKFSLVL FMCSFCVILP CLKAGADSDD GTIAVFDPVL QEREKRAEIA ALKAYQPDPE 60 SVTDELIKDV ETSIERSNTT RRHLAKKIKA ECTATNPIDR CWRCNPDWAK NRKQLANCVL 120 GFGRRTRGGK RGPIYVVHDS SDNDMANPKP GTLRHAVIQT GPLWIIFKHS MTIKLNKELI 180 MTSHKTIDGR GANVHIAHGA GITIQFVENV IIHGIHIHDI VSVGGGLIRD SLDHIGLRGQ 240 SDGDGITVFG SSHIWLDHLS MWNCYDGLTD VVQGSTAITI SNCHFTRHND VMLFGANDLY 300 ERDQIMQITV AFNHFGKGLI QRMPRCRFGF FHVVNNDYTH WQMYAIGGSS HPTIISQGNR 360 YVAPPDPKLK EITSRAYSTP EAVWKTWQWR SEGDLMENGA YFRESGEPRK GRGHFSRFDV 420 INAKPGSFVR RLTRFAGTLG CRVGKAC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam04431 | Pec_lyase_N | 1.0e-10 | 33 | 84 | 53 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
COG3866 | PelB | 2.0e-24 | 161 | 359 | 219 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 6.0e-58 | 178 | 361 | 206 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 6.0e-69 | 171 | 365 | 206 | + Amb_all domain. |
Gene Ontology | |
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GO Term | Description |
GO:0030570 | pectate lyase activity |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 96 | 439 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 96 | 439 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 4e-20 | 153 | 352 | 38 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.00000000000004 | 174 | 361 | 120 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1bn8_A | 0.000000000003 | 183 | 338 | 148 | 316 | A Chain A, Bacillus Subtilis Pectate Lyase |