| Basic Information | |
|---|---|
| Species | Fragaria vesca |
| Cazyme ID | mrna01325.1-v1.0-hybrid |
| Family | GT8 |
| Protein Properties | Length: 2126 Molecular Weight: 239883 Isoelectric Point: 5.1805 |
| Chromosome | Chromosome/Scaffold: 6 Start: 1946890 End: 1961413 |
| Description | SIN3-like 2 |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GT8 | 1827 | 2088 | 0 |
| VHVAMTIDSEYLRGTIAAVHSVLKHASCPQNTFFHFIASDSSPVSSQDLTRVVHSTFPSLRFRVYQFKESIVSHLISSSIRQALDNPLNYARSYLADLLD ACVERVIYLDSDVIVVDDVEKLWRIKLSGSRVIGAPEYCHANFTKYFSDGFWEDSEMSKVFEGKSACYFNTGVMVMDLVRWREGDYTRKIESWMEIQKEK RIYELGSLPPFLLVFGGDVEAIHHRWNQHGLGGDNVVNSCRSLHPGPVSLLHWSGKGKPWSR | |||
| Full Sequence |
|---|
| Protein Sequence Length: 2126 Download |
| MKRIRDDVYS GGGSGGGAGG GSSQLKRPLA SSRGDSNGPP QVQGGGGGVV GGVASVGVVS 60 VGVAASQKLT TNDALTYLKE VKDMFQDQRE KYEMFLEVMK DFKAQRTDTT GVIARVKELF 120 KGHTKLILGF NTFLPKGYEI TLEEVEPKKT VEFEEAISFV NKIKKRFQND EQVYKSFLDI 180 LNMYRKEHKD INEVYQEVAS LFDDQPDLLD EFTRFLPDTS ATTSTHQGQY GRNPYPRFNE 240 RSSATPTLRP MPIDKQRRRD KITSHGDHDI SVDRPELDDD KGMIKVLKEQ RKRFPEKENR 300 DRRNRDHEDR EVETDNNRDY NLQRFPEKRK SSRKVDGFGA NANFSPYDDK DTLKGKYSQA 360 FGFFEKVKER LCSQDDYQTF LKFLHIYSNG IIKRNDLQNM VTDLLKHPDL MEEFNEFLER 420 CENIESVGSD GHLSRSVKLE DKDKEPKREM EGVKEKERYR EKYWAKSIQE LDLSNCERCT 480 PSYRLLPEDY PIPSASQRSE LAAQVLNDHW VSVTSGSEDY SFKHMRRNQY EESLFRCEDD 540 RFELDMLLES VSSTCKRAEE LLNSMNENKL SMETQIHIED HFIALNTRCI ERLYGDHGLD 600 VMDILRKSPT LALPVILTRL KQKQEEWTRC RVDFNKVWAD IYAKNHYKSL DHRSFYFKQQ 660 DSKNLSSKYL VAEIKELKDK KQIEDDILLA VAAGNRQSIV PHLEYEYLDV SIHEDLYKLV 720 EYSSEELSST KEQLSKTMRL YTTFLEPMLG IPSRPHGSED DEDVDKTRKL AMTCSASSNG 780 ESDGSPGGDT TMVNFKQPKS GGNEDENALA EVASSRTTLA NGDTLAKEDG SCDADNPGRD 840 DSICNNIRVE KEQKNMGISD KMHGPSKPIV SIDRVGNSNA SFAIGGENNH GRISMEVTSG 900 SVATTSRPYD SISENEQSKK TIADTAVPSS EGGDTAKPAS FGIGVFTEST KVNSRHEESI 960 GPSKIEKEEG ELSPIGDYGE DNFVVSGDAV QALPKGNHGV ERQYQSGNGE EICPQDAGEN 1020 DADADDENSE NVSEAGEDVS GSETAGDECS REEHGEEDAE HDDVDGKAES EGEAEGMADG 1080 HLVGDSCSLQ LPERFLMSVK PLAKHVSEPL VDDKKDCRVF YGNDNFYVLY RLHQILYERI 1140 LAAKTNSVGA ETKWRTSKDG NPPDLYGRFM SALYNLLDGS ADNAKFEDEC RAIIGNQSYV 1200 LFTLDKLIYK FVKQLQAVAT DEMDNKLLHL YEYEKSRKKG KLIDSVYFEN TRVLVHEENI 1260 YRLEFHSAPS RLSIQLMDSV SEKPEASAVS MEPNFSSYLH NDFLSLYPGK KEPHGITLQR 1320 NKRKFAGQDE SSAFSNAMEG VQLVNGLECK IACNSSKISY VLDTEDYFFR MRRKRRMSSE 1380 SRSPYCDQTR GFSDSEITMD SISSSCSPAI PKDLAKKKRT NRLAKLKQSK LDVRREQWLS 1440 HVKNKGHKVN SDRNEGSPTS FMHVDNERKI LLDNLETSST GGSIDNSSIH DSDVESLMNS 1500 PCESSLDRSD SVKNLNESSN GGCPENVSKE DPDDGCLDDW EAVADALTAD DNQHNNLFGF 1560 PATTEMRVEP TGPELCIENP VAELSKPENR NIVPESRVNT CAWRPNDASR PQSLPNLSKE 1620 HSFPVQSDWH CGHGAIAWTW QSIVPQPSSC PICYEDLDIT DSSFLPCSCG FRLCLFCHKR 1680 ILEADGRCPG CRKQYDRVNE VMSFNGGATT FRNNENAEYS DRTELESLSE SQLLYDVAYV 1740 NLVVSRQLAE AIVLVLVVEG PTIFLVLFFF LLSLITFTPA NAIRSFPERV GISFLQQFSE 1800 APEYKNGFSC RVLGVGNFPA ACDPSLVHVA MTIDSEYLRG TIAAVHSVLK HASCPQNTFF 1860 HFIASDSSPV SSQDLTRVVH STFPSLRFRV YQFKESIVSH LISSSIRQAL DNPLNYARSY 1920 LADLLDACVE RVIYLDSDVI VVDDVEKLWR IKLSGSRVIG APEYCHANFT KYFSDGFWED 1980 SEMSKVFEGK SACYFNTGVM VMDLVRWREG DYTRKIESWM EIQKEKRIYE LGSLPPFLLV 2040 FGGDVEAIHH RWNQHGLGGD NVVNSCRSLH PGPVSLLHWS GKGKPWSRLD LGKPCLVDYL 2100 WAPYDLYIHH HHHHHHHHEQ LLAVL* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG5602 | SIN3 | 0.0001 | 343 | 418 | 78 | + Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics] | ||
| COG5602 | SIN3 | 4.0e-7 | 155 | 217 | 63 | + Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics] | ||
| COG5602 | SIN3 | 1.0e-7 | 1120 | 1277 | 160 | + Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics] | ||
| COG5602 | SIN3 | 4.0e-17 | 69 | 140 | 72 | + Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics] | ||
| COG5602 | SIN3 | 4.0e-66 | 147 | 681 | 542 | + Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005634 | nucleus |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0016757 | transferase activity, transferring glycosyl groups |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2rms_A | 3e-19 | 67 | 137 | 1 | 71 | B Chain B, Solution Structure Of The Msin3a Pah1-Sap25 Sid Complex |
| PDB | 2rms_A | 0.0000002 | 149 | 217 | 1 | 69 | B Chain B, Solution Structure Of The Msin3a Pah1-Sap25 Sid Complex |
| PDB | 2rmr_A | 3e-19 | 67 | 137 | 1 | 71 | A Chain A, Solution Structure Of Msin3a Pah1 Domain |
| PDB | 2rmr_A | 0.0000002 | 149 | 217 | 1 | 69 | A Chain A, Solution Structure Of Msin3a Pah1 Domain |
