Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna01445.1-v1.0-hybrid |
Family | GH28 |
Protein Properties | Length: 445 Molecular Weight: 47158.2 Isoelectric Point: 4.6384 |
Chromosome | Chromosome/Scaffold: 3 Start: 29026069 End: 29027504 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 52 | 374 | 0 |
RDACSSESASKVVVPSGTYKLKEAIFEGPCKAPIEVHIQGTLQAPKDPSSDVWVTFSLINMLTLSGGGTFDGQGAHGSKRSDFRDIKFSSITNSIVKNIT SLNSKKFHISVTECTNVVFDHLTITSPTDDANTDGIDIGSSKGINVTHTNIATGDDCIAVSEGTNQLLVTGVTCGPGHGISIGSLGQKPDEQPVVGVTVM NCTLVGTTNGARIKTWPDSPGASTASDIVFEDIVMVNVENPIIIDQNYCSGEDDDRCKQNIPSTVQIRNVRFKNIRGSSATPIAVNLACSPSVPCQNVEL EDVDLTYSGDEGSLSSQCINVRP |
Full Sequence |
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Protein Sequence Length: 445 Download |
MGLKLMNILT ILVLSWFASA TTSQADVFDV TSSIYGGKPG YDIAEGLANA WRDACSSESA 60 SKVVVPSGTY KLKEAIFEGP CKAPIEVHIQ GTLQAPKDPS SDVWVTFSLI NMLTLSGGGT 120 FDGQGAHGSK RSDFRDIKFS SITNSIVKNI TSLNSKKFHI SVTECTNVVF DHLTITSPTD 180 DANTDGIDIG SSKGINVTHT NIATGDDCIA VSEGTNQLLV TGVTCGPGHG ISIGSLGQKP 240 DEQPVVGVTV MNCTLVGTTN GARIKTWPDS PGASTASDIV FEDIVMVNVE NPIIIDQNYC 300 SGEDDDRCKQ NIPSTVQIRN VRFKNIRGSS ATPIAVNLAC SPSVPCQNVE LEDVDLTYSG 360 DEGSLSSQCI NVRPRITRVT EALACANVPG LPSDNSPPPP LYDYQSPMIY TGALDNSSCS 420 WPRASVMVYL LISGLGVRLL QRLL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 2.0e-73 | 13 | 369 | 386 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 3.0e-75 | 42 | 369 | 347 | + Probable polygalacturonase | ||
PLN02155 | PLN02155 | 4.0e-78 | 11 | 387 | 391 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 6.0e-104 | 55 | 372 | 329 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 1.0e-110 | 1 | 375 | 396 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2iq7_G | 1e-21 | 52 | 372 | 15 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 1e-21 | 52 | 372 | 15 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 1e-21 | 52 | 372 | 15 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 1e-21 | 52 | 372 | 15 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_C | 1e-21 | 52 | 372 | 15 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |