Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna02341.1-v1.0-hybrid |
Family | GH28 |
Protein Properties | Length: 410 Molecular Weight: 44777.2 Isoelectric Point: 8.9075 |
Chromosome | Chromosome/Scaffold: 3 Start: 8933346 End: 8936461 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 67 | 395 | 0 |
NDACQWRGMARVLIPRGIFMLFPVVFSGPCKGRIAFLILGTLRASTEPSTFNSENWINFRYLEQLTVAGGGTLDGQGPLVWPRNNCNNHPCRTLPISLSF DFVNNATVAYLRSYNSKNAHIRLFGCNKMDFTKLRLSAPGDSPNTDGIKIGSSYRIRISRSVITTGDDCIAILSGSREIHIHKIFCGPGHGISIGSLGGY GNEHDVEGVYVKDSGSKGTTNGLRIKTWADSHPLKVSKIIYENIVMTDVMNPIIIGQNYCPSPPCNQQVTSNVQISNVTYNNIRGSSSSKEAVILKCSKT SPCKNIVMNNIKLSLDGPGGIASSYCENA |
Full Sequence |
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Protein Sequence Length: 410 Download |
MSLISSFLGF RVYLFLFLLV WATEGQNVNL FHQTEQLGGR KFFNVMDYGA VEGGVTDNSQ 60 AFLKAWNDAC QWRGMARVLI PRGIFMLFPV VFSGPCKGRI AFLILGTLRA STEPSTFNSE 120 NWINFRYLEQ LTVAGGGTLD GQGPLVWPRN NCNNHPCRTL PISLSFDFVN NATVAYLRSY 180 NSKNAHIRLF GCNKMDFTKL RLSAPGDSPN TDGIKIGSSY RIRISRSVIT TGDDCIAILS 240 GSREIHIHKI FCGPGHGISI GSLGGYGNEH DVEGVYVKDS GSKGTTNGLR IKTWADSHPL 300 KVSKIIYENI VMTDVMNPII IGQNYCPSPP CNQQVTSNVQ ISNVTYNNIR GSSSSKEAVI 360 LKCSKTSPCK NIVMNNIKLS LDGPGGIASS YCENAVGVTY GTQNPRPCI* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 2.0e-81 | 44 | 406 | 370 | + polygalacturonase ADPG | ||
PLN02155 | PLN02155 | 7.0e-88 | 43 | 409 | 369 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 2.0e-91 | 70 | 395 | 326 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 3.0e-93 | 40 | 408 | 376 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 2.0e-118 | 8 | 408 | 412 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 4e-19 | 108 | 394 | 36 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 4e-19 | 108 | 394 | 36 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 4e-19 | 108 | 394 | 36 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 4e-19 | 108 | 394 | 36 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 4e-19 | 108 | 394 | 36 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |