Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna03511.1-v1.0-hybrid |
Family | GH28 |
Protein Properties | Length: 415 Molecular Weight: 44731.9 Isoelectric Point: 7.3506 |
Chromosome | Chromosome/Scaffold: 3 Start: 14233385 End: 14236149 |
Description | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 54 | 382 | 0 |
WNEACKNNGGGVVLFQKGTYLVNPLMIEGSACKGPMEVQIQGTLLASKEYQYSVGIDHWILFRYVANLVISGGGTLDGQGASAWPYNDCIKNKQCKALPG SLKFDFANNTKIENITSLNSKNTHINCFACRDVIFSNIHITAPGDSPNTDGIKIGESSNIQIHDSVIATGDDCLAFLPDSRNISVTRIHCGPGHGISLGS ISSKSITGLSVTNSSLVGTQNGVRIKTKSPSQPGSVSNVTFQHIQMDKVDNPIVIDQQYCPGSGCTAPKTSEIQITDVKYIDIWGTSNTETAVNFKCSEN KPCTKIELRDINLNYSGGRQANESCLNAK |
Full Sequence |
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Protein Sequence Length: 415 Download |
MVIECVSLLL LVLLINNVQA ARILQAPMKT FDVNQYGGVA DGKTDNSKAF IAAWNEACKN 60 NGGGVVLFQK GTYLVNPLMI EGSACKGPME VQIQGTLLAS KEYQYSVGID HWILFRYVAN 120 LVISGGGTLD GQGASAWPYN DCIKNKQCKA LPGSLKFDFA NNTKIENITS LNSKNTHINC 180 FACRDVIFSN IHITAPGDSP NTDGIKIGES SNIQIHDSVI ATGDDCLAFL PDSRNISVTR 240 IHCGPGHGIS LGSISSKSIT GLSVTNSSLV GTQNGVRIKT KSPSQPGSVS NVTFQHIQMD 300 KVDNPIVIDQ QYCPGSGCTA PKTSEIQITD VKYIDIWGTS NTETAVNFKC SENKPCTKIE 360 LRDINLNYSG GRQANESCLN AKGVPLPPRV DPLIIFLDEP TSDLRLHLRR RLEA* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 2.0e-74 | 19 | 392 | 382 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 2.0e-76 | 31 | 384 | 364 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 1.0e-76 | 24 | 387 | 377 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 1.0e-83 | 58 | 382 | 329 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 3.0e-100 | 30 | 388 | 371 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-22 | 108 | 366 | 98 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 4e-19 | 86 | 380 | 40 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 4e-19 | 86 | 380 | 40 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 4e-19 | 86 | 380 | 40 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 4e-19 | 86 | 380 | 40 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |