Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna03600.1-v1.0-hybrid |
Family | GH28 |
Protein Properties | Length: 472 Molecular Weight: 51220.4 Isoelectric Point: 8.8019 |
Chromosome | Chromosome/Scaffold: 4 Start: 24471992 End: 24474178 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 92 | 433 | 0 |
WKAACKVNGASVEIPSGFKFLIKPITLQGPCMPNLVLQIDGTLMAPPKVGSWSKSSLFQWINFKWVHNFTIQGTGVVDGQGFDWWSSCSSSSSSVCYLQK KSNKHIPNFKPTALRFYSSYDVIVRDIRIINSPQCHLKFDSSGGIKVNNITISSPENSPNTDGIHLQNTQNVEIHHSTIGCGDDCVSIQTGCSNVHVHHI NCGPGHGISLGGLGKDRSVACVSNIIVNDVSFQNTLSGVRIKTWQGGIGSVKNVSFSNIQVSDVKVPVMIDQYYCDKKSCKNQTGAVAISGVKYDQIIGT YSVQPVHLACSSDVPCTDVDLIDIQLKPSAGYQRFQHALCWN |
Full Sequence |
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Protein Sequence Length: 472 Download |
MQMKRSITSS TLLLFCVIVL VTFSITSVEA RKHQTKKTKP HKHQKGGNGT HGSHLPCPAP 60 TPVPQDGSFS VLSFGAKGDG VSDDSKALTA AWKAACKVNG ASVEIPSGFK FLIKPITLQG 120 PCMPNLVLQI DGTLMAPPKV GSWSKSSLFQ WINFKWVHNF TIQGTGVVDG QGFDWWSSCS 180 SSSSSVCYLQ KKSNKHIPNF KPTALRFYSS YDVIVRDIRI INSPQCHLKF DSSGGIKVNN 240 ITISSPENSP NTDGIHLQNT QNVEIHHSTI GCGDDCVSIQ TGCSNVHVHH INCGPGHGIS 300 LGGLGKDRSV ACVSNIIVND VSFQNTLSGV RIKTWQGGIG SVKNVSFSNI QVSDVKVPVM 360 IDQYYCDKKS CKNQTGAVAI SGVKYDQIIG TYSVQPVHLA CSSDVPCTDV DLIDIQLKPS 420 AGYQRFQHAL CWNSYGKSQP PLVPSSIDYC LRRDENPVKR IARSHDHQHL C* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 8.0e-68 | 103 | 417 | 316 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 4.0e-70 | 69 | 422 | 359 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03010 | PLN03010 | 2.0e-70 | 69 | 422 | 359 | + polygalacturonase | ||
PLN02218 | PLN02218 | 3.0e-82 | 68 | 418 | 356 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 2.0e-90 | 69 | 465 | 404 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 3e-23 | 159 | 369 | 110 | 318 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 2e-20 | 71 | 452 | 23 | 361 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1nhc_F | 1e-17 | 161 | 409 | 73 | 310 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 1e-17 | 161 | 409 | 73 | 310 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 1e-17 | 161 | 409 | 73 | 310 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |