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Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna04504.1-v1.0-hybrid |
Family | GH28 |
Protein Properties | Length: 586 Molecular Weight: 64648.6 Isoelectric Point: 7.2025 |
Chromosome | Chromosome/Scaffold: 4 Start: 26118964 End: 26123785 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 269 | 553 | 0 |
EGTFMVAPVILQRHCKGPMELQVQGTLQAPVDVQSSVGVDHWITFRYVEHFVIHGGGLLDGQGASAWGKSKALPTDIRHITFLNSKNTHMKIFTCNAVII SNINISAPGNSPNTDGIKVSNSNNTQISDSVISAGDDCISFLPNSNNINITRVHYGPGHGFSIGSISSGTVTNLNIRNSSLVGTQNGVRIKTKAHPSQPG NVAYITFEHIEMDKVGNPIVIDQNYCPGHGCSEKESSQVQINNVNFNNIWGTSSTKTAVTFNCSRSKPCYEIQLRDINLSKGGAT |
Full Sequence |
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Protein Sequence Length: 586 Download |
MLSEISGIHY LTTPEFQLPN PANFGNIIMQ DNLPNSFHFN EASVYSNLFQ TQIPPPGHDQ 60 LFATPMQSSS LSNNSSTSDE AEEQVQQLSN IIDQRKQRRM ISNRESARRS RMRKQKHLDE 120 LWSQVLRLRT ENHSLIDRLN HVSESHDKVL EENAKLKEEA SDLRQMLTEI QISTALRSTE 180 LETLSNVLNS GEDVEQDEEA WLVFVWSRWL CGKLGTLKGA VLQRTRCGGC AGASLYGHSP 240 RHPILDELVD GMKPQRVCAV ADGKFDNSEG TFMVAPVILQ RHCKGPMELQ VQGTLQAPVD 300 VQSSVGVDHW ITFRYVEHFV IHGGGLLDGQ GASAWGKSKA LPTDIRHITF LNSKNTHMKI 360 FTCNAVIISN INISAPGNSP NTDGIKVSNS NNTQISDSVI SAGDDCISFL PNSNNINITR 420 VHYGPGHGFS IGSISSGTVT NLNIRNSSLV GTQNGVRIKT KAHPSQPGNV AYITFEHIEM 480 DKVGNPIVID QNYCPGHGCS EKESSQVQIN NVNFNNIWGT SSTKTAVTFN CSRSKPCYEI 540 QLRDINLSKG GATMRCEGVP TPHPRHFSNP CNYVKPLEKG SPSVR* 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 4.0e-43 | 255 | 547 | 312 | + Probable polygalacturonase At3g15720 | ||
PLN02155 | PLN02155 | 4.0e-44 | 270 | 553 | 304 | + polygalacturonase | ||
PLN02793 | PLN02793 | 3.0e-44 | 271 | 547 | 302 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 3.0e-61 | 268 | 559 | 318 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 3.0e-65 | 269 | 564 | 317 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
Gene Ontology | |
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GO Term | Description |
GO:0003700 | sequence-specific DNA binding transcription factor activity |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
GO:0006355 | regulation of transcription, DNA-dependent |
GO:0043565 | sequence-specific DNA binding |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 1e-18 | 306 | 548 | 98 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 0.000000000000003 | 324 | 561 | 77 | 332 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.000000000000003 | 324 | 561 | 77 | 332 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.000000000000003 | 324 | 561 | 77 | 332 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 0.000000000000003 | 324 | 561 | 77 | 332 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Sequence Alignments (This image is cropped. Click for full image.) |
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