Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna05106.1-v1.0-hybrid |
Family | CE8 |
Protein Properties | Length: 349 Molecular Weight: 38756.8 Isoelectric Point: 7.3995 |
Chromosome | Chromosome/Scaffold: 4 Start: 22379120 End: 22380777 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 53 | 339 | 0 |
ILVDIAGDGQFKSIQAAIDSVPAGNNQWVIIHVRQGVYREKVHIPPEKSHIFMRGNGKGRTQIVWSQSSEVNEESATFIVEAPLFIAYGISFKNEAPTGV AYTSQNQSVAALVGADKAAFYHCAFYSTHNTLFDYKGKHYYDNCYIQGSIDFIFGRAKSIYHNCEIFVIGDKRVSIKGSVTANHRQSADECSGFVFIKGK VYGVGDHVYLGRAKGAFSRVVYAETYLSRTIMPEGWTNWSYAGGTENLYHAEYNCKGPGAEFSDRVPWAKQLTDQEVQPFLTIDFIE |
Full Sequence |
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Protein Sequence Length: 349 Download |
MMFKLQGLVA FAITFFVSAS LTHGFPHGSH SPIPEPKVDS PLLTEKLNTN RTILVDIAGD 60 GQFKSIQAAI DSVPAGNNQW VIIHVRQGVY REKVHIPPEK SHIFMRGNGK GRTQIVWSQS 120 SEVNEESATF IVEAPLFIAY GISFKNEAPT GVAYTSQNQS VAALVGADKA AFYHCAFYST 180 HNTLFDYKGK HYYDNCYIQG SIDFIFGRAK SIYHNCEIFV IGDKRVSIKG SVTANHRQSA 240 DECSGFVFIK GKVYGVGDHV YLGRAKGAFS RVVYAETYLS RTIMPEGWTN WSYAGGTENL 300 YHAEYNCKGP GAEFSDRVPW AKQLTDQEVQ PFLTIDFIEG KDWLPVSF* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02432 | PLN02432 | 7.0e-87 | 47 | 344 | 298 | + putative pectinesterase | ||
PLN02665 | PLN02665 | 5.0e-89 | 39 | 344 | 308 | + pectinesterase family protein | ||
PLN02497 | PLN02497 | 2.0e-89 | 51 | 344 | 297 | + probable pectinesterase | ||
PLN02682 | PLN02682 | 1.0e-98 | 46 | 345 | 310 | + pectinesterase family protein | ||
PLN02480 | PLN02480 | 0 | 8 | 346 | 339 | + Probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 5.00264e-43 | 53 | 347 | 9 | 311 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 6e-34 | 59 | 344 | 11 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 0.000000000000003 | 62 | 332 | 43 | 352 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_B | 0.000000000001 | 58 | 346 | 12 | 340 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_A | 0.000000000001 | 58 | 346 | 12 | 340 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |