Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna05284.1-v1.0-hybrid |
Family | GH28 |
Protein Properties | Length: 403 Molecular Weight: 43673.9 Isoelectric Point: 5.5027 |
Chromosome | Chromosome/Scaffold: 6 Start: 27283316 End: 27285411 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 51 | 386 | 0 |
WNASCLDKGTPRLVIPGEKTYLLQPTNFSGPCQSSSIHVEISGKLLAPSPDAWKECVDLWLTFSEVTNLTVSGSGEINGQGTKHENFHYFQVNNYKVQCE RPKALRFYRCDSLQLSGLTLADSPRTHISIQYCNYANVSYLQIRAPEDSPNTDGIDISMSSNVNIHDCNIGTGDDCIAVNNGTFIIDIKNIACGPGHGIS IGSLGKNGDHNTVENIHVKNCSFNSTMNGARIKTFQGGSGYARRISFEEITLTTAGHPIIIDQYYCPEHDCENSTSSVQVSDVTFSGFHGTSKNEQAITL NCSQSVNCVNIVMNNINITSAVASEEVRASCSYVNG |
Full Sequence |
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Protein Sequence Length: 403 Download |
MRSVLVSCVL LCILAWCDFE IGYGQMTYNV LDHGAVGDGH RDDSEAFLKA WNASCLDKGT 60 PRLVIPGEKT YLLQPTNFSG PCQSSSIHVE ISGKLLAPSP DAWKECVDLW LTFSEVTNLT 120 VSGSGEINGQ GTKHENFHYF QVNNYKVQCE RPKALRFYRC DSLQLSGLTL ADSPRTHISI 180 QYCNYANVSY LQIRAPEDSP NTDGIDISMS SNVNIHDCNI GTGDDCIAVN NGTFIIDIKN 240 IACGPGHGIS IGSLGKNGDH NTVENIHVKN CSFNSTMNGA RIKTFQGGSG YARRISFEEI 300 TLTTAGHPII IDQYYCPEHD CENSTSSVQV SDVTFSGFHG TSKNEQAITL NCSQSVNCVN 360 IVMNNINITS AVASEEVRAS CSYVNGTSYA TVPQVPCLSS KA* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 7.0e-82 | 27 | 355 | 332 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 4.0e-84 | 59 | 353 | 295 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 4.0e-93 | 30 | 400 | 375 | + Probable polygalacturonase | ||
PLN03010 | PLN03010 | 7.0e-115 | 19 | 388 | 374 | + polygalacturonase | ||
PLN03003 | PLN03003 | 4.0e-115 | 29 | 399 | 376 | + Probable polygalacturonase At3g15720 |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 1e-23 | 108 | 370 | 100 | 363 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 2e-19 | 151 | 345 | 99 | 295 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 2e-19 | 151 | 345 | 99 | 295 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 2e-19 | 151 | 345 | 99 | 295 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 2e-19 | 151 | 345 | 99 | 295 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |