Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna05650.1-v1.0-hybrid |
Family | CE8 |
Protein Properties | Length: 947 Molecular Weight: 106215 Isoelectric Point: 6.5858 |
Chromosome | Chromosome/Scaffold: 1 Start: 15310853 End: 15317381 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 34 | 125 | 4.1e-21 |
ITVSKSGNANFTTVQQAIDSVPSGNSVWIRILLNHGVYFEKVVIPKDKPYIILEGDPKKLTTIEFGDAGLVSQCSTFTLLASDFVARYIYFK | |||
CE8 | 125 | 274 | 0 |
KDTLWDARGRHYFSGCNITGSIDFIWGNGQSIYEGCQIRSLANVIGTTGFITAQGREGPNETTGFVFKDCHVYGSGTSFLGRAYRNYSRVLFSGTYMENV VAPEGWSLWTPPQISFADSIIFAENNCSGPGAEMSHRVPWEKKLSNEESK | |||
CE8 | 325 | 608 | 0 |
KVDMKGHGDFRTVQEAIDSIPSNNSWWTRIILNHGLYFEKVVIPQEKPYIILEGHPKFLTAIEFGDFGSVGKSPTFTLLADNFVARNILFKNSYDHLIKE DPNRRTTWAVAAKIVGDKASFYHCGFISLQDTLWDARGRHYFYDCDVRGAIDFIWGNGQSIYEKCQIMSLSKIIGTTGYITAQGREGPDETTGFVFKDCY VCGSGTAFLGRAYRNYSRVLFSGTYMENVITPEGWSLWTPPQISYADVITFSEANCRGPGADLSRRISWEKKLSDEEVISLTNT | |||
CE8 | 648 | 931 | 0 |
ITVSKNGGGKFSTVQQAIDSIPSNNEGWIRIQIQHGVYHEKVTIPQDKPFVILEGDPNHQTTIEFGASGSVVESPTFKAFADNFVAKNIVFKNTYDHLIT FDPNNGRKTTWAPAAKIAGDKASFYNCTFISLQDTLTDFQGRHYFYGCNIQGAIDFIWGNGQSIYEKCRIMALSKIIGTTGYITAQGREGPNETTGFVFK DCHLCGSGRILLGRAYRTYARVLFSGTYMENIVAPEGWSEWEVRPVDTITFSEAKCRGPGANMSHRISWEKKLSDDEVGYLTNT |
Full Sequence |
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Protein Sequence Length: 947 Download |
MESHLISIIM FLFIFLGKLG SCYDGRKYDV SRTITVSKSG NANFTTVQQA IDSVPSGNSV 60 WIRILLNHGV YFEKVVIPKD KPYIILEGDP KKLTTIEFGD AGLVSQCSTF TLLASDFVAR 120 YIYFKDTLWD ARGRHYFSGC NITGSIDFIW GNGQSIYEGC QIRSLANVIG TTGFITAQGR 180 EGPNETTGFV FKDCHVYGSG TSFLGRAYRN YSRVLFSGTY MENVVAPEGW SLWTPPQISF 240 ADSIIFAENN CSGPGAEMSH RVPWEKKLSN EESKVRCNLL TNNMESLITT ILLSLLALFY 300 FLSKLGSCSH AMKFDLTDEV SRTFKVDMKG HGDFRTVQEA IDSIPSNNSW WTRIILNHGL 360 YFEKVVIPQE KPYIILEGHP KFLTAIEFGD FGSVGKSPTF TLLADNFVAR NILFKNSYDH 420 LIKEDPNRRT TWAVAAKIVG DKASFYHCGF ISLQDTLWDA RGRHYFYDCD VRGAIDFIWG 480 NGQSIYEKCQ IMSLSKIIGT TGYITAQGRE GPDETTGFVF KDCYVCGSGT AFLGRAYRNY 540 SRVLFSGTYM ENVITPEGWS LWTPPQISYA DVITFSEANC RGPGADLSRR ISWEKKLSDE 600 EVISLTNTAS FIDQDGCMRF LMTLVLFFFF AKFDAMRYDQ QDDVSVTITV SKNGGGKFST 660 VQQAIDSIPS NNEGWIRIQI QHGVYHEKVT IPQDKPFVIL EGDPNHQTTI EFGASGSVVE 720 SPTFKAFADN FVAKNIVFKN TYDHLITFDP NNGRKTTWAP AAKIAGDKAS FYNCTFISLQ 780 DTLTDFQGRH YFYGCNIQGA IDFIWGNGQS IYEKCRIMAL SKIIGTTGYI TAQGREGPNE 840 TTGFVFKDCH LCGSGRILLG RAYRTYARVL FSGTYMENIV APEGWSEWEV RPVDTITFSE 900 AKCRGPGANM SHRISWEKKL SDDEVGYLTN TSSFINQDGW LEKQPH* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02665 | PLN02665 | 1.0e-77 | 322 | 606 | 293 | + pectinesterase family protein | ||
PLN02497 | PLN02497 | 3.0e-83 | 31 | 269 | 279 | + probable pectinesterase | ||
PLN02665 | PLN02665 | 5.0e-86 | 647 | 941 | 300 | + pectinesterase family protein | ||
PLN02497 | PLN02497 | 5.0e-108 | 616 | 945 | 335 | + probable pectinesterase | ||
PLN02497 | PLN02497 | 5.0e-111 | 321 | 616 | 298 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 8e-37 | 640 | 942 | 1 | 309 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1gq8_A | 5e-33 | 326 | 594 | 11 | 282 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1gq8_A | 9e-26 | 30 | 265 | 5 | 282 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 9e-31 | 650 | 916 | 7 | 277 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1xg2_A | 1e-27 | 326 | 593 | 7 | 277 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |