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Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna05694.1-v1.0-hybrid |
Family | PL4 |
Protein Properties | Length: 675 Molecular Weight: 76491.4 Isoelectric Point: 9.0247 |
Chromosome | Chromosome/Scaffold: 6 Start: 28920048 End: 28922072 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 47 | 658 | 0 |
VKMVNTSNTIVLDNGLVRLTFSNPTGHVTGIKYGGIDNLLEIHNKPTNRGYWDLNWNYPGQKSRTSIFEGILGTEFRVITSAEDQVEISFTRTYNVSLPQ GVTVPFNMDKRYILQRGRSGFYAYAIFERLEGWPEAKVDQIRMVFKLQQAKFRYMALSDTRQRFMPTAYERGIYGIKLAYKEAVLLNNTGEVDDKYQYTI EDKDNKVHGWICTDEKSPVGFWMITPTDEFKMAGPFKQGLTSHVGPTTLSVFVSSHYAGNVSMNFQQGEAWKKVFGPVFIYLNSAHQGSKNSISSLWSNA KQQMLEEVKSWPYNFTESRDFLSSDQRGSLSSRLLIYDQYISHQPLHSARFAYVGLAPPGEVGSWQRESKGYQFWTQADNKGHFIIKNVLPGNYSLYASV PGIIGDYKYEADITIEQGSKIQMPDFIYEPPRNGPTLWEIGIPDRTAAEFYIPDPYPTLSNKLYIVSERFRQYGLWARYEDRYPDSDLVYKVGVHNYSND WFYAQVTRDIGNGTYVGTTWQIQFELESATHPGNFTLRLALASGSYSKLLVRINNLNTKQPHFATGRIGVDNAIARHGIHGLYSLFSVSVPSSLLHQGTN TIYLTQPKGESP |
Full Sequence |
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Protein Sequence Length: 675 Download |
MGRPMGCGTL VVLLVLVFLL IGHGNNRSTS SRTSLRSTST SERYYGVKMV NTSNTIVLDN 60 GLVRLTFSNP TGHVTGIKYG GIDNLLEIHN KPTNRGYWDL NWNYPGQKSR TSIFEGILGT 120 EFRVITSAED QVEISFTRTY NVSLPQGVTV PFNMDKRYIL QRGRSGFYAY AIFERLEGWP 180 EAKVDQIRMV FKLQQAKFRY MALSDTRQRF MPTAYERGIY GIKLAYKEAV LLNNTGEVDD 240 KYQYTIEDKD NKVHGWICTD EKSPVGFWMI TPTDEFKMAG PFKQGLTSHV GPTTLSVFVS 300 SHYAGNVSMN FQQGEAWKKV FGPVFIYLNS AHQGSKNSIS SLWSNAKQQM LEEVKSWPYN 360 FTESRDFLSS DQRGSLSSRL LIYDQYISHQ PLHSARFAYV GLAPPGEVGS WQRESKGYQF 420 WTQADNKGHF IIKNVLPGNY SLYASVPGII GDYKYEADIT IEQGSKIQMP DFIYEPPRNG 480 PTLWEIGIPD RTAAEFYIPD PYPTLSNKLY IVSERFRQYG LWARYEDRYP DSDLVYKVGV 540 HNYSNDWFYA QVTRDIGNGT YVGTTWQIQF ELESATHPGN FTLRLALASG SYSKLLVRIN 600 NLNTKQPHFA TGRIGVDNAI ARHGIHGLYS LFSVSVPSSL LHQGTNTIYL TQPKGESPFT 660 GIMYDYIRLE GPPV* 720 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd10316 | RGL4_M | 5.0e-27 | 372 | 471 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 1.0e-41 | 484 | 670 | 189 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 4.0e-70 | 47 | 331 | 292 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 2.0e-73 | 54 | 232 | 180 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |