Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna05877.1-v1.0-hybrid |
Family | GH28 |
Protein Properties | Length: 563 Molecular Weight: 61833.8 Isoelectric Point: 8.2962 |
Chromosome | Chromosome/Scaffold: 6 Start: 24688442 End: 24692517 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 197 | 524 | 0 |
EVACSIPTRTRILIPSGRTYLIHPVDIAGPCRSKVTLMISGTIIAPISPDAWIGLNARKWIYFHGVNHLTVEGGGTVDGMGQEWWARSCKSNSTNAITFH RCKNLKVRNLMIVNSQKMHMQFTNCMRVVASHLQVIAPATSPNTDGIHISVSKGVQVKDSIIRTGDDCISIVSNSSRIQIVNIVCGPGHGISIGSLGKSN SWSQVRDVIIDTALLSNTENGVRIKTWQGGSGFASNIAFRNVVMDNVSNPIIIDQYYCDSQLPCLNQTLAVKVENISFTHIKGTSATEEAIRFACSDDSQ CEGLYLEDVQLLPSTGEIARSFCWEAQG |
Full Sequence |
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Protein Sequence Length: 563 Download |
MNIWDQFIFC RSDDCAKLLL SQLSSTLEKL ETFNQRNIEE TLITLKVELL GRNNRFQSLE 60 EVKHKGAVNQ FRRHRRCLPP PITLTCSSSK NHCVLKDESS SSVLVISVCT FSDTMKSLRL 120 YSSSSSTCLI LLLLIFSFSV SSNTTVDREK FDSLLQLPHS GSTRTRLRSK RVLFLGAFGA 180 KGDGITDDSK AFQNAWEVAC SIPTRTRILI PSGRTYLIHP VDIAGPCRSK VTLMISGTII 240 APISPDAWIG LNARKWIYFH GVNHLTVEGG GTVDGMGQEW WARSCKSNST NAITFHRCKN 300 LKVRNLMIVN SQKMHMQFTN CMRVVASHLQ VIAPATSPNT DGIHISVSKG VQVKDSIIRT 360 GDDCISIVSN SSRIQIVNIV CGPGHGISIG SLGKSNSWSQ VRDVIIDTAL LSNTENGVRI 420 KTWQGGSGFA SNIAFRNVVM DNVSNPIIID QYYCDSQLPC LNQTLAVKVE NISFTHIKGT 480 SATEEAIRFA CSDDSQCEGL YLEDVQLLPS TGEIARSFCW EAQGSSLGTV DPPACFSDSE 540 ELVKQKVLLH PVSLVYGGKA TL* |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
PLN02188 | PLN02188 | 1.0e-93 | 178 | 535 | 368 | + polygalacturonase/glycoside hydrolase family protein |
pfam00295 | Glyco_hydro_28 | 2.0e-94 | 200 | 507 | 313 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
PLN03010 | PLN03010 | 2.0e-94 | 178 | 542 | 370 | + polygalacturonase |
PLN02218 | PLN02218 | 3.0e-112 | 148 | 532 | 399 | + polygalacturonase ADPG |
PLN02793 | PLN02793 | 0 | 145 | 547 | 410 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 7e-24 | 267 | 453 | 113 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1hg8_A | 4e-18 | 264 | 500 | 70 | 324 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
PDB | 1nhc_F | 4e-18 | 254 | 507 | 56 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 4e-18 | 254 | 507 | 56 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 4e-18 | 254 | 507 | 56 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Sequence Alignments (This image is cropped. Click for full image.) |
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