Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna06153.1-v1.0-hybrid |
Family | GH28 |
Protein Properties | Length: 463 Molecular Weight: 50040.5 Isoelectric Point: 6.9068 |
Chromosome | Chromosome/Scaffold: 4 Start: 16614606 End: 16616534 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 68 | 418 | 0 |
YASDGGAQLIVPPGKWLTGSFNLTSHFTLFLHKDAVILASQEESQWPLLPPLPSYGQGRDAPGGRFSSLIFGTNLTDVVITGNNGTIDGQGAPWWDKFEK GLLNVTRPYLLEIMFSNQIQISNLTFTNSPSWHIHPVYSSNITIQGITILAPVEVPNTDGINPDSCSQTRIEDCYIVSGDDCIAVKSGWDNYGIKFGMPM EHLVIRRLTCISPKSATVALGSEMSGGIRDVRVEDVTAINTESSIRIKTAVGRGAYVKDIFVRRMTLSTMKYVFWMTGAYGSHPSEGFDPNALPVIQNIN YRDIVAKNVTHPGQLDGIANDPFKGICISNATITLTAKPKKVLWNCTDVEG |
Full Sequence |
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Protein Sequence Length: 463 Download |
MSDVAIVVIL GLVLLQSAEC RKIQEAVTYS AIACRKHSAL LTDFGAVGDG KILNTKAFKA 60 AVDKLSQYAS DGGAQLIVPP GKWLTGSFNL TSHFTLFLHK DAVILASQEE SQWPLLPPLP 120 SYGQGRDAPG GRFSSLIFGT NLTDVVITGN NGTIDGQGAP WWDKFEKGLL NVTRPYLLEI 180 MFSNQIQISN LTFTNSPSWH IHPVYSSNIT IQGITILAPV EVPNTDGINP DSCSQTRIED 240 CYIVSGDDCI AVKSGWDNYG IKFGMPMEHL VIRRLTCISP KSATVALGSE MSGGIRDVRV 300 EDVTAINTES SIRIKTAVGR GAYVKDIFVR RMTLSTMKYV FWMTGAYGSH PSEGFDPNAL 360 PVIQNINYRD IVAKNVTHPG QLDGIANDPF KGICISNATI TLTAKPKKVL WNCTDVEGIT 420 SNVTPKPCAL LPEQQKPINC AFPEDKLAIE GVKLMTCSAA SA* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 2.0e-20 | 35 | 316 | 300 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02218 | PLN02218 | 4.0e-21 | 41 | 400 | 374 | + polygalacturonase ADPG | ||
PLN03003 | PLN03003 | 3.0e-25 | 41 | 338 | 307 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 2.0e-26 | 137 | 428 | 300 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 1.0e-54 | 41 | 335 | 318 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0 | 41 | 400 | 30 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0 | 41 | 400 | 30 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0 | 41 | 400 | 30 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0 | 41 | 400 | 30 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 0.00000000007 | 83 | 374 | 52 | 336 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |