Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna07055.1-v1.0-hybrid |
Family | GH28 |
Protein Properties | Length: 674 Molecular Weight: 74085.4 Isoelectric Point: 9.4454 |
Chromosome | Chromosome/Scaffold: 4 Start: 20179101 End: 20187631 |
Description | polygalacturonase 4 |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 89 | 417 | 0 |
THTGKSRVVIPEGTFKAGPVIFQGPCTSKKPIIVEIRGTVLGANDLSLYKEPSWILIERVDGVIVTGRGTLDGQGSSVWKHVESCSGSNCSPLPPNLKFN RVTNGVIRGINSLHPKGVHIFITESQNIRVHWVQIEAPATSPNTDGIHISDSNNVRIARTRISTGDDCVGMIQGSTNIAINKVFCGPGHGISVGSLGKYE TENDVRGIVVKNCTFNNTDNGIRIKSWPGSQPSLATGMIFRDLIMQNVKNPIIIDQEYGCNDKCNKAPSKVKISNVHYINVKGTTSSDIAVDLICSSHSP CEDIELRDIDLKYVGPKKVRTSSQCKNAK |
Full Sequence |
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Protein Sequence Length: 674 Download |
MAINTGMSWC HAFLIVCLVP LAHLATATER QIFPPVLPDI LHGNYLAGHG GADPTEKIFN 60 VLDFGAVTNG KKDSSLSLIR TWIAACRGTH TGKSRVVIPE GTFKAGPVIF QGPCTSKKPI 120 IVEIRGTVLG ANDLSLYKEP SWILIERVDG VIVTGRGTLD GQGSSVWKHV ESCSGSNCSP 180 LPPNLKFNRV TNGVIRGINS LHPKGVHIFI TESQNIRVHW VQIEAPATSP NTDGIHISDS 240 NNVRIARTRI STGDDCVGMI QGSTNIAINK VFCGPGHGIS VGSLGKYETE NDVRGIVVKN 300 CTFNNTDNGI RIKSWPGSQP SLATGMIFRD LIMQNVKNPI IIDQEYGCND KCNKAPSKVK 360 ISNVHYINVK GTTSSDIAVD LICSSHSPCE DIELRDIDLK YVGPKKVRTS SQCKNAKIDR 420 TSCSGLRVNL TLSSSFSLGF RRPNRERALK MAYSAARRTL ASALTRTLSA RSNPSLSSRS 480 RFASALLNNQ QPSLVPDPVH SQTRKLSGSG YSPLNDTSPN WNNRPPKETI LLDGCDYEHW 540 LIVLEFSDPK PSEEEMINSY VKTLASVVGS EEEAKKKIYS VSTTTYTGFG ALISEELSLK 600 VKEQPGVLWV LPDSYLDVPN KDYGGDLYID GKVIPRPQYR YTERQNNSRN RPRPRHDRRR 660 ETMPVERRQP VQK* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 4.0e-74 | 57 | 436 | 385 | + polygalacturonase | ||
PLN02155 | PLN02155 | 8.0e-78 | 58 | 423 | 376 | + polygalacturonase | ||
PLN02793 | PLN02793 | 4.0e-81 | 55 | 399 | 352 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 2.0e-89 | 91 | 418 | 329 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 5.0e-115 | 58 | 417 | 363 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 8e-17 | 153 | 346 | 113 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1hg8_A | 0.000000000000002 | 159 | 375 | 81 | 307 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
PDB | 2iq7_G | 0.000000000000002 | 158 | 415 | 79 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 0.000000000000002 | 158 | 415 | 79 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 0.000000000000002 | 158 | 415 | 79 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |