Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna07072.1-v1.0-hybrid |
Family | GH28 |
Protein Properties | Length: 491 Molecular Weight: 52769.7 Isoelectric Point: 6.3817 |
Chromosome | Chromosome/Scaffold: 4 Start: 20294887 End: 20298510 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 105 | 452 | 0 |
DKGGAQLYVPPGRWLTGSFNLTSNLTLFLEKGAVILGSQDPSHWDILEPLPSYGRGIELPGGRYRSLINGYMLQDVVITGDNGTINGQGSVWWDWFSSHT LNHSRPHLVEIVSSKDVVVSNLTFVNSPAYNIHPVYCSNVHIHNISVSAPPESPYTVGIVPDSSNNVCIQDCSIGMGYDAIVLKSGWDEYGIAYGRPTTN VHIRRVQLQSSSGSSLAFGSEMSGGISNVLVEQVHLYNSLSGIQFRTTKGRGGYIRNIIISDVKMENIGVAFGASGQFGSHPDDNFDPNALPVLDHISLQ DVIGTNISIAGKFTGIKESPFTSFCLSNISLSISSGSSTNSWVCSNVS |
Full Sequence |
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Protein Sequence Length: 491 Download |
MIDCGPRSRP LPLCQPTCGL YAPCTPFTYF IPLPHPRVVL LLLLSLGNAI KLGGEDEDWP 60 CDSKLQLKPR PHSVSILEFG AVGDGKTLNT LAFQNAIFYL KSFADKGGAQ LYVPPGRWLT 120 GSFNLTSNLT LFLEKGAVIL GSQDPSHWDI LEPLPSYGRG IELPGGRYRS LINGYMLQDV 180 VITGDNGTIN GQGSVWWDWF SSHTLNHSRP HLVEIVSSKD VVVSNLTFVN SPAYNIHPVY 240 CSNVHIHNIS VSAPPESPYT VGIVPDSSNN VCIQDCSIGM GYDAIVLKSG WDEYGIAYGR 300 PTTNVHIRRV QLQSSSGSSL AFGSEMSGGI SNVLVEQVHL YNSLSGIQFR TTKGRGGYIR 360 NIIISDVKME NIGVAFGASG QFGSHPDDNF DPNALPVLDH ISLQDVIGTN ISIAGKFTGI 420 KESPFTSFCL SNISLSISSG SSTNSWVCSN VSGFSDSVFP EPCSALKSSH SNSSSDCFSI 480 QTLNGKAVAL * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 2.0e-16 | 62 | 372 | 332 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 9.0e-19 | 179 | 451 | 284 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03003 | PLN03003 | 5.0e-24 | 65 | 372 | 314 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 3.0e-24 | 71 | 372 | 318 | + polygalacturonase ADPG | ||
COG5434 | PGU1 | 1.0e-49 | 74 | 413 | 371 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 2e-35 | 72 | 467 | 26 | 448 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 2e-35 | 72 | 467 | 26 | 448 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 2e-35 | 72 | 467 | 26 | 448 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 2e-35 | 72 | 467 | 26 | 448 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 0.0000000000001 | 118 | 373 | 52 | 305 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
Sequence Alignments (This image is cropped. Click for full image.) |
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