| Basic Information | |
|---|---|
| Species | Fragaria vesca |
| Cazyme ID | mrna07626.1-v1.0-hybrid |
| Family | GH10 |
| Protein Properties | Length: 865 Molecular Weight: 97837.1 Isoelectric Point: 5.5058 |
| Chromosome | Chromosome/Scaffold: Start: 7897975 End: 7905659 |
| Description | Glycosyl hydrolase family 10 protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH10 | 299 | 564 | 0 |
| VSKDFPFGSAISKTILGNLPYQNWFVERFNAAVFENELKWYATEPQQGNVTYIIADQMLQFVRANKITTRGHNIFWEDPKYTPAWVRNLTSTDQLKSAVN SRIQSLMTKYKEEFIHWDVSNEMLHFDFYEKQLGPNATLDFFQTAHKSDPLATLFMNEFNVVETCTDVNSTVDTYVSRLRELQQGGVSMDGIGLEGHFTR PNPPLMRAIIDKLATLGLPIWLTEVDISNTLDKETQAIYLEQVLREGFSHPSVNGIMLWTALHPYG | |||
| Full Sequence |
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| Protein Sequence Length: 865 Download |
| MAFGSNQELG FWIIGLWRKK VAELLMSRRG RRNWEDEGSR KKSWGLVDLR GFVRVLVEKM 60 LGAELLDSER VEEEEGEDVW DVRVEVEGEL TMYNSIYSNP TESGGGGVEA GREEWDWNGP 120 LYDSTAYTEC KRQPEKPLYG GGIIVDEPSA VVDRDKGGVY SPAFLLKNLT GNGTIYSFSS 180 WVKLRSAGSA MIQASLKAED ETYSCIGTVL AKRGCWSFLK GGFVLDSPSN LSILFFQNTD 240 GRDVSLAIAS ASLQPFSVQQ WNTYQQYMIN TKRKRAVTVH VSNEQGKGLQ GAAITVEQVS 300 KDFPFGSAIS KTILGNLPYQ NWFVERFNAA VFENELKWYA TEPQQGNVTY IIADQMLQFV 360 RANKITTRGH NIFWEDPKYT PAWVRNLTST DQLKSAVNSR IQSLMTKYKE EFIHWDVSNE 420 MLHFDFYEKQ LGPNATLDFF QTAHKSDPLA TLFMNEFNVV ETCTDVNSTV DTYVSRLREL 480 QQGGVSMDGI GLEGHFTRPN PPLMRAIIDK LATLGLPIWL TEVDISNTLD KETQAIYLEQ 540 VLREGFSHPS VNGIMLWTAL HPYGCYEMCL TDNNLQNLPA GDVVDRLLKE WQTRKIEAQT 600 DEHGSHSFYG FLGEYRVSVK YSNRTTNSTF SLCQVVQVPT RRRDIPSCEG KIPVVISLFK 660 ETRLWYDGPQ DYEMDGERTL VATQGLLTYP EHMSHFVAQQ LLVMSVPEEQ VPPIIEKLDK 720 KLSVVSDWIA RQPCGYLGHR ITGPEDRIRR ARTRGARIRG AEDDMVIATQ ESIASYKANL 780 TPATRSFIHG LKKLRLDGLE EAVIRKTPTC AICLQDFAES VEELITCLPC KHYFHVNCIV 840 LCLEINHICS YCRYPMPTLE AGEP* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd00162 | RING | 3.0e-9 | 809 | 855 | 48 | + RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) | ||
| pfam13639 | zf-RING_2 | 3.0e-11 | 808 | 855 | 48 | + Ring finger domain. | ||
| COG3693 | XynA | 9.0e-38 | 285 | 526 | 256 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| pfam00331 | Glyco_hydro_10 | 1.0e-59 | 300 | 557 | 277 | + Glycosyl hydrolase family 10. | ||
| smart00633 | Glyco_10 | 2.0e-77 | 336 | 584 | 269 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nq6_A | 2e-28 | 305 | 584 | 15 | 298 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 1tux_A | 6e-27 | 308 | 588 | 12 | 301 | A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 1i1x_A | 2e-26 | 292 | 590 | 2 | 303 | A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 1i1w_A | 2e-26 | 292 | 590 | 2 | 303 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 1gor_A | 3e-26 | 292 | 590 | 2 | 303 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| Hydropathy |
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| Sequence Alignments (This image is cropped. Click for full image.) |
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