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Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna07968.1-v1.0-hybrid |
Family | GT35 |
Protein Properties | Length: 836 Molecular Weight: 94929.2 Isoelectric Point: 7.7958 |
Chromosome | Chromosome/Scaffold: 3 Start: 22122159 End: 22127002 |
Description | alpha-glucan phosphorylase 2 |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT35 | 109 | 830 | 0 |
ALNKLGHDLENITEQEKDAALGNGGLGRLASCFLDSMATLNLPAWGYGLRYRYGLFKQRIAKDGQEETAEDWLEKFSPWEVVRHDVVYPVRFFGRVHVNP DGSRKWVEGEVLRALAYDVPIPGYKTKNTISLRLWDAKACSEDFNLFQFNDGQYESAAQLHSRAQQICAVLYPGDATEEGKLLRLKQQFFLCSASLQDII FRFKERKQGAELKWSEFPTKVAVQMNDTHPTLAIPELMRLLLDEEGLGWDEAWDVTSRTVAYTNHTVLPEALEKWSQTVMWKLLPRHMEIIQEIDKRFIE MVRATRKDLQNKIPTMCVLDNNPQKPVVRMANLCVVSAHTVNGVAELHSDILKNELFADYVSIWPSKFQNKTNGITPRRWLKFCSPELSNIITKWLKTDE WATNLDLLVGLRKLADDAKLQEEWASAKMANKKRLAQYIEHVTGVEIDPNSLFDIQVKRIHEYKRQLLNILGAIYRYKKLKEMSPEERKKATPRTVMIGG KAFATYTNAKRIVKLVNDVGDVVNTDPEVNSYLKVVFVPNYNVSVAELLIPGSELSQHISTAGMEASGTSNMKFALNGCLIIGTLDGANVEIREEVGQAN FFLFGATADEVPKLRKDRENGLFKPDPRFEEAKKFIRSGAFGSYDYNPLLDSLEGNSGFGRADYFLVGHDFAGYLDAQARVDEAYKDKKKWLKSSILSTA GSGKFSSDRTIAQYAKEIWKIE |
Full Sequence |
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Protein Sequence Length: 836 Download |
MAKPNREASK IPAAANPLAE EPTKIASNIN YHANFSPHFS PFKFESEQAY YATAESVRDR 60 LIQNWNETYV HFHRKNPKQT YYLSMEYLQG RALTNAIGNL NVQGAYAEAL NKLGHDLENI 120 TEQEKDAALG NGGLGRLASC FLDSMATLNL PAWGYGLRYR YGLFKQRIAK DGQEETAEDW 180 LEKFSPWEVV RHDVVYPVRF FGRVHVNPDG SRKWVEGEVL RALAYDVPIP GYKTKNTISL 240 RLWDAKACSE DFNLFQFNDG QYESAAQLHS RAQQICAVLY PGDATEEGKL LRLKQQFFLC 300 SASLQDIIFR FKERKQGAEL KWSEFPTKVA VQMNDTHPTL AIPELMRLLL DEEGLGWDEA 360 WDVTSRTVAY TNHTVLPEAL EKWSQTVMWK LLPRHMEIIQ EIDKRFIEMV RATRKDLQNK 420 IPTMCVLDNN PQKPVVRMAN LCVVSAHTVN GVAELHSDIL KNELFADYVS IWPSKFQNKT 480 NGITPRRWLK FCSPELSNII TKWLKTDEWA TNLDLLVGLR KLADDAKLQE EWASAKMANK 540 KRLAQYIEHV TGVEIDPNSL FDIQVKRIHE YKRQLLNILG AIYRYKKLKE MSPEERKKAT 600 PRTVMIGGKA FATYTNAKRI VKLVNDVGDV VNTDPEVNSY LKVVFVPNYN VSVAELLIPG 660 SELSQHISTA GMEASGTSNM KFALNGCLII GTLDGANVEI REEVGQANFF LFGATADEVP 720 KLRKDRENGL FKPDPRFEEA KKFIRSGAFG SYDYNPLLDS LEGNSGFGRA DYFLVGHDFA 780 GYLDAQARVD EAYKDKKKWL KSSILSTAGS GKFSSDRTIA QYAKEIWKIE ECRVP* 840 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd04300 | GT1_Glycogen_Phosphorylase | 0 | 26 | 829 | 813 | + This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. | ||
TIGR02093 | P_ylase | 0 | 29 | 829 | 809 | + glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
pfam00343 | Phosphorylase | 0 | 109 | 831 | 728 | + Carbohydrate phosphorylase. The members of this family catalyze the formation of glucose 1-phosphate from one of the following polyglucoses; glycogen, starch, glucan or maltodextrin. | ||
PRK14985 | PRK14985 | 0 | 82 | 828 | 752 | + maltodextrin phosphorylase; Provisional | ||
COG0058 | GlgP | 0 | 47 | 830 | 789 | + Glucan phosphorylase [Carbohydrate transport and metabolism] |
Gene Ontology | |
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GO Term | Description |
GO:0004645 | phosphorylase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1z8d_A | 0 | 19 | 833 | 22 | 832 | A Chain A, Crystal Structure Of Human Muscle Glycogen Phosphorylase A With Amp And Glucose |
PDB | 2gj4_A | 0 | 19 | 833 | 10 | 820 | A Chain A, Structure Of Rabbit Muscle Glycogen Phosphorylase In Complex With Ligand |
PDB | 4el5_A | 0 | 19 | 833 | 10 | 820 | A Chain A, Structure Of Rabbit Muscle Glycogen Phosphorylase In Complex With Ligand |
PDB | 4el0_A | 0 | 19 | 833 | 10 | 820 | A Chain A, Structure Of Rabbit Muscle Glycogen Phosphorylase In Complex With Ligand |
PDB | 4eky_A | 0 | 19 | 833 | 10 | 820 | A Chain A, Structure Of Rabbit Muscle Glycogen Phosphorylase In Complex With Ligand |
Sequence Alignments (This image is cropped. Click for full image.) |
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