Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna08290.1-v1.0-hybrid |
Family | GH28 |
Protein Properties | Length: 439 Molecular Weight: 47564.9 Isoelectric Point: 8.1113 |
Chromosome | Chromosome/Scaffold: 2 Start: 13228585 End: 13230886 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 72 | 423 | 0 |
AEACSSNGKAVLLLPPHRSYFVKPVTFSGAKCKAHHLTMQIQGTIMAFEDPKTYHFPNENKVQDWLTFESVESLVVEGPGTINGNGEKWWQSSCKQNSKT QTREPHCNKDAPTAVTFKKCNNLTVNNLNIEKAQRMHVTFKNCTNVKASGLSINTSEASPNTDGIHIAETNKIHISDCRISTGDDCISIIGGSRDVQATN ITCGPGHGISIGSLGKGGSEDHVSDVTVDGAKLTGTMYGVRIKTWPGGSGYANRIIFQNIQMENVTDPIIIDQNYCDAATKVTKGECKPPPVQKNTAVQV RNVMYRNIKGTVSKDGKAIVFNCSSVPGACELIDLEDIRLEKGGAAVCSNVK |
Full Sequence |
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Protein Sequence Length: 439 Download |
MAPERRSFSF CIVIVLSFIT KTSCHGGILP WFHFNNVSGA RPSTPAPISV DKFGAKGIDH 60 TDDTEAFEKA WAEACSSNGK AVLLLPPHRS YFVKPVTFSG AKCKAHHLTM QIQGTIMAFE 120 DPKTYHFPNE NKVQDWLTFE SVESLVVEGP GTINGNGEKW WQSSCKQNSK TQTREPHCNK 180 DAPTAVTFKK CNNLTVNNLN IEKAQRMHVT FKNCTNVKAS GLSINTSEAS PNTDGIHIAE 240 TNKIHISDCR ISTGDDCISI IGGSRDVQAT NITCGPGHGI SIGSLGKGGS EDHVSDVTVD 300 GAKLTGTMYG VRIKTWPGGS GYANRIIFQN IQMENVTDPI IIDQNYCDAA TKVTKGECKP 360 PPVQKNTAVQ VRNVMYRNIK GTVSKDGKAI VFNCSSVPGA CELIDLEDIR LEKGGAAVCS 420 NVKPTYSRVD LPLNRCPN* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 4.0e-69 | 49 | 431 | 387 | + polygalacturonase | ||
PLN02188 | PLN02188 | 1.0e-75 | 48 | 432 | 395 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 2.0e-84 | 77 | 423 | 348 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 1.0e-102 | 44 | 421 | 380 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 3.0e-109 | 40 | 412 | 374 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 1e-22 | 108 | 422 | 36 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 1e-22 | 108 | 422 | 36 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 1e-22 | 108 | 422 | 36 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 1e-22 | 108 | 422 | 36 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 1e-22 | 108 | 422 | 36 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |