y
Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna08295.1-v1.0-hybrid |
Family | GH28 |
Protein Properties | Length: 442 Molecular Weight: 47563.5 Isoelectric Point: 8.3031 |
Chromosome | Chromosome/Scaffold: 2 Start: 13245481 End: 13247717 |
Description | polygalacturonase abscission zone A. thaliana |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 109 | 423 | 0 |
WKTACSSTGAPVLLVPKKSYLVKPITFSGPCKSQLTMQIYGTIEASGDRSVYSKDLNHWIMFDNVKNLLVQGPGTINGNGQVWWKNSCKRKETKAVTFYK CNNLVVKNLKFQDAQQMHVSFEGCTNVQASYLTVTAPETSPNTDGIHITSTKNMTISNSNIGTGDDCISIVSGSQNVQASSITCGPGHGISIGSLGKDGS EDYVSKVTVNGAKFSGTTNGVRIKTWQGGSGMASNIAFQNIEMKNVYNPIIIDQNYCDTSDGKCKQQSKAVKVRNVLYQNIRGTSASQDAITFDCSKSIP CQGIVLQNVQLNKGA |
Full Sequence |
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Protein Sequence Length: 442 Download |
MAVMSSSLLL SVLLVFSLSS SCYGSSFQEN SLLHSYVDDD NREETGFYGS EPSHPSYMSI 60 FENPKFSESN NLRARLFSTS ASVKQVSVDD FGAKGNGAAD DTQAFVKAWK TACSSTGAPV 120 LLVPKKSYLV KPITFSGPCK SQLTMQIYGT IEASGDRSVY SKDLNHWIMF DNVKNLLVQG 180 PGTINGNGQV WWKNSCKRKE TKAVTFYKCN NLVVKNLKFQ DAQQMHVSFE GCTNVQASYL 240 TVTAPETSPN TDGIHITSTK NMTISNSNIG TGDDCISIVS GSQNVQASSI TCGPGHGISI 300 GSLGKDGSED YVSKVTVNGA KFSGTTNGVR IKTWQGGSGM ASNIAFQNIE MKNVYNPIII 360 DQNYCDTSDG KCKQQSKAVK VRNVLYQNIR GTSASQDAIT FDCSKSIPCQ GIVLQNVQLN 420 KGAECSNVNL AYKGNVSPRC A* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 1.0e-92 | 86 | 426 | 344 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 9.0e-109 | 81 | 439 | 374 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 3.0e-121 | 113 | 428 | 324 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 2.0e-136 | 88 | 419 | 342 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 6.0e-156 | 72 | 440 | 380 | + polygalacturonase ADPG |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 1e-27 | 178 | 430 | 113 | 374 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1hg8_A | 2e-18 | 184 | 438 | 81 | 348 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
PDB | 1nhc_F | 4e-16 | 184 | 428 | 80 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 4e-16 | 184 | 428 | 80 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 4e-16 | 184 | 428 | 80 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |