Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna08602.1-v1.0-hybrid |
Family | GH13 |
Protein Properties | Length: 435 Molecular Weight: 49330.2 Isoelectric Point: 7.1006 |
Chromosome | Chromosome/Scaffold: 2 Start: 19268848 End: 19272945 |
Description | alpha-amylase-like 2 |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH13 | 45 | 335 | 9.6e-32 |
KHLESKVPDIAKSGFTSAWLPPSTHSIAPEGYLPQNIYSLNSKYGSEHQLKGLLQKMNQCKVRPMADIVINHRVGTTQGHGGIYNRYDGIPLSWDEHAVT SCTGGLGNRSTGDNFNGVPNIDHSQPFVRKDITAWLLWLRHTVGFQDFRFDFAKGYAAKYVKEYIEGAKPIFSVGEYWNSCNYNSDGLDYNQDSHRQQII NWIDGTGQLSTAFDFTTKGILQEAVKGQLWRLRDPQGKPPGVLGLWPSRAVTFLDNHDTGSTQAHWPFPSNHIMEGYAYIFTHPGIPSVFY |
Full Sequence |
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Protein Sequence Length: 435 Download |
MGDRSIVQDY QEHNQQTDIG ASIRNGREIL LQAFNWESHK HDWWKHLESK VPDIAKSGFT 60 SAWLPPSTHS IAPEGYLPQN IYSLNSKYGS EHQLKGLLQK MNQCKVRPMA DIVINHRVGT 120 TQGHGGIYNR YDGIPLSWDE HAVTSCTGGL GNRSTGDNFN GVPNIDHSQP FVRKDITAWL 180 LWLRHTVGFQ DFRFDFAKGY AAKYVKEYIE GAKPIFSVGE YWNSCNYNSD GLDYNQDSHR 240 QQIINWIDGT GQLSTAFDFT TKGILQEAVK GQLWRLRDPQ GKPPGVLGLW PSRAVTFLDN 300 HDTGSTQAHW PFPSNHIMEG YAYIFTHPGI PSVFYDHFYD WGDSIHDQIV KLIQIRKQKD 360 IHSRSSIRIL EAQPNLYSAI IGEKVCMKIG DSSWCPDVRE WTLATSGDRY AVWHKKNSGD 420 FALAPVASMH AYSD* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PRK09441 | PRK09441 | 7.0e-40 | 25 | 359 | 421 | + cytoplasmic alpha-amylase; Reviewed | ||
PLN00196 | PLN00196 | 3.0e-140 | 28 | 415 | 405 | + alpha-amylase; Provisional | ||
PLN02784 | PLN02784 | 3.0e-158 | 3 | 416 | 421 | + alpha-amylase | ||
cd11314 | AmyAc_arch_bac_plant_AmyA | 2.0e-158 | 29 | 367 | 343 | + Alpha amylase catalytic domain found in archaeal, bacterial, and plant Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase). AmyA (EC 3.2.1.1) catalyzes the hydrolysis of alpha-(1,4) glycosidic linkages of glycogen, starch, related polysaccharides, and some oligosaccharides. This group includes AmyA from bacteria, archaea, water fleas, and plants. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. | ||
PLN02361 | PLN02361 | 0 | 17 | 415 | 401 | + alpha-amylase |
Gene Ontology | |
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GO Term | Description |
GO:0003824 | catalytic activity |
GO:0004556 | alpha-amylase activity |
GO:0005509 | calcium ion binding |
GO:0005975 | carbohydrate metabolic process |
GO:0043169 | cation binding |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2qps_A | 0 | 28 | 415 | 2 | 404 | A Chain A, "sugar Tongs" Mutant Y380a In Complex With Acarb |
PDB | 3bsg_A | 0 | 28 | 418 | 2 | 407 | A Chain A, Barley Alpha-Amylase Isozyme 1 (Amy1) H395a Mutant |
PDB | 1bg9_A | 0 | 28 | 415 | 1 | 402 | A Chain A, Barley Alpha-Amylase Isozyme 1 (Amy1) H395a Mutant |
PDB | 1ava_B | 0 | 28 | 415 | 1 | 402 | A Chain A, Amy2BASI PROTEIN-Protein Complex From Barley Seed |
PDB | 1ava_A | 0 | 28 | 415 | 1 | 402 | A Chain A, Amy2BASI PROTEIN-Protein Complex From Barley Seed |
Sequence Alignments (This image is cropped. Click for full image.) |
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