Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna08938.1-v1.0-hybrid |
Family | CE8 |
Protein Properties | Length: 369 Molecular Weight: 40799.8 Isoelectric Point: 8.8186 |
Chromosome | Chromosome/Scaffold: 5 Start: 9115026 End: 9117241 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 71 | 358 | 0 |
ITVDIRGSGDFMSVQSAVNAVPVNNTRFTWSFVGLCREKVVVPATKPYITFQGAGKDATVIEWHDRASDRGTNGQQLRTYRTASVTVFANYFSARNISFK NTAPAPMPGMQGWQAVAFRISGDKAYFSGCGFYGAQDTLCDDVGRHYFKECYIEGSIDFIFGNGRSMYKDCELHSIATKFGSIAAQFRKSPDDKSGFAFL NCRVTGKGPLYVGRAMGKYARIVYSYTYFDDVVAHGAWDDWNTTSTKTDFLGVYKCWGPGAEALRGVPYAPELDFDSAHRFLRKSFVN |
Full Sequence |
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Protein Sequence Length: 369 Download |
MASLPSSSFV CFYFFGFILT LLLFHAEPTQ ARRSSFDILS SPATGDSNSS SSSNHTSNQR 60 KWVGPVGYLH ITVDIRGSGD FMSVQSAVNA VPVNNTRFTW SFVGLCREKV VVPATKPYIT 120 FQGAGKDATV IEWHDRASDR GTNGQQLRTY RTASVTVFAN YFSARNISFK NTAPAPMPGM 180 QGWQAVAFRI SGDKAYFSGC GFYGAQDTLC DDVGRHYFKE CYIEGSIDFI FGNGRSMYKD 240 CELHSIATKF GSIAAQFRKS PDDKSGFAFL NCRVTGKGPL YVGRAMGKYA RIVYSYTYFD 300 DVVAHGAWDD WNTTSTKTDF LGVYKCWGPG AEALRGVPYA PELDFDSAHR FLRKSFVNGR 360 HWISPSDA* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02665 | PLN02665 | 3.0e-91 | 71 | 365 | 300 | + pectinesterase family protein | ||
PLN02304 | PLN02304 | 1.0e-100 | 71 | 368 | 309 | + probable pectinesterase | ||
PLN02671 | PLN02671 | 3.0e-104 | 71 | 363 | 298 | + pectinesterase | ||
PLN02682 | PLN02682 | 1.0e-118 | 71 | 365 | 299 | + pectinesterase family protein | ||
PLN02634 | PLN02634 | 0 | 60 | 368 | 313 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 5e-33 | 63 | 363 | 5 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 3e-25 | 77 | 363 | 11 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 1e-16 | 80 | 275 | 43 | 253 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 1qjv_B | 0.000000000000009 | 81 | 274 | 18 | 227 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 0.000000000000009 | 81 | 274 | 18 | 227 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |