Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna09634.1-v1.0-hybrid |
Family | CE8 |
Protein Properties | Length: 334 Molecular Weight: 37742.6 Isoelectric Point: 6.9102 |
Chromosome | Chromosome/Scaffold: 6 Start: 8444577 End: 8446012 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 38 | 318 | 0 |
ITVDKHGRGDFASVQQAIDSIPSNNYVWTRIHINFGIYVEKVEIPQDKPYIILEGDPNHFPVIEYGSDAGDVVKSPAFKLYADNFVARNIVFKNTYNRLL PPKDGRGRKMAQAPAAAIYGDKASFYQCRFLSVQDTLADIQGRHYFYDCYIEGRVDFIWGFGQSIYEKCQINSLGSGYITAQGRDSAYNATGFVFKDCYV YGSGPTLLGRAYRPYARVLFVGTYMEDIIKAEGWIAPWNNGQDYLTAFSEVDCKGPGAELSKRVPWEKKLSAEEVSYFSNA |
Full Sequence |
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Protein Sequence Length: 334 Download |
MQSFISVTLA LFFFFGALEA RPYPMNYNPQ QDFVSRTITV DKHGRGDFAS VQQAIDSIPS 60 NNYVWTRIHI NFGIYVEKVE IPQDKPYIIL EGDPNHFPVI EYGSDAGDVV KSPAFKLYAD 120 NFVARNIVFK NTYNRLLPPK DGRGRKMAQA PAAAIYGDKA SFYQCRFLSV QDTLADIQGR 180 HYFYDCYIEG RVDFIWGFGQ SIYEKCQINS LGSGYITAQG RDSAYNATGF VFKDCYVYGS 240 GPTLLGRAYR PYARVLFVGT YMEDIIKAEG WIAPWNNGQD YLTAFSEVDC KGPGAELSKR 300 VPWEKKLSAE EVSYFSNAAS FINQDGWMQK QPK* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02432 | PLN02432 | 2.0e-80 | 38 | 325 | 291 | + putative pectinesterase | ||
PLN02176 | PLN02176 | 1.0e-81 | 34 | 332 | 307 | + putative pectinesterase | ||
PLN02665 | PLN02665 | 5.0e-85 | 36 | 333 | 304 | + pectinesterase family protein | ||
PLN02682 | PLN02682 | 4.0e-85 | 33 | 329 | 310 | + pectinesterase family protein | ||
PLN02497 | PLN02497 | 2.0e-107 | 35 | 332 | 306 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 2e-33 | 30 | 329 | 1 | 309 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 1e-29 | 40 | 303 | 7 | 277 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 0.000000000000002 | 47 | 316 | 43 | 353 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_B | 0.0000000005 | 48 | 299 | 18 | 315 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_A | 0.0000000005 | 48 | 299 | 18 | 315 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |