| Basic Information | |
|---|---|
| Species | Fragaria vesca |
| Cazyme ID | mrna09912.1-v1.0-hybrid |
| Family | GT48 |
| Protein Properties | Length: 2185 Molecular Weight: 248006 Isoelectric Point: 9.3663 |
| Chromosome | Chromosome/Scaffold: 4 Start: 13968739 End: 13994142 |
| Description | glucan synthase-like 8 |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GT48 | 1164 | 1908 | 0 |
| IPKNLEARRRLEFFTNSLFMDMPSAKPVSEMVPFSVFTPYYSETVLYSSSELRLENEDGISTLFYLQKIFPDEWDNFLERIGRDQSTGDAELQENSSDAL ELRFWVSYRGQTLARTGVFLKLNGIVRGMMYYRKALMLQSYLERRSLGVDDYSQVESFTSQGFESSTESRAQADLKFTYVVSCQIYGQQKQRKAPEAADI SLLLQRNEALRVAYIHVEETGTADGKIMKEFYSKLVKADINGKDQEIYSIKLPGDPKLGEGKPENQNHAIVFTRGEAVQTIDMNQDNYLEEAMKMRNLLE EFRKIHGLRPPSILGVREHVFTGSVSSLASFMSNQETSFVTLAQRVLAFPLKVRMHYGHPDVFDRIFHITRGGISKSSRVINISEDIFAGFNSTLRQGNI THHEYIQVGKGRDVGLNQIALFEGKVAGGNGEQVLSRDVYRLGQLFDFFKMFSFFYTTVGYYVCTMMTVLIVYIFLYGRAYLAFSGLDRAIALQAKMLGN TALDAVLNAQFLVQIGIFTAVPMIMGFILEMGLLKAVFSFITMQLQLCSVFFTFSLGTRTHYFGRTILHGGAKYRATGRGFVVQHIKFADNYRLYSRSHF VKAFEVALLLIVYIAYGYTDGGAVSYVLLTLSSWFLVISWLFAPYIFNPSGFEWQKTVEDFDDWTSWLLYKGGVGVKGENSWESWWDEEQMHIQTLRGRI LETILSLRFFIFQYGIVYKLHLTGKDTSLAIYGFSWVVLITIVMI | |||
| Full Sequence |
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| Protein Sequence Length: 2185 Download |
| MARVYDNWER LVRATLKREQ LRTSGQGHGR TPSGIAGAVP TSLGKGTNID AILQAADALQ 60 DEDANVSRIL CEQAYSMAQN LDPTSDGRGV LQFKTGLMSV IKQKLARRDG GQIDRNRDIE 120 HLWEFYQRYK QRHRLEDMQK AEQKMRESGT FTANFGDYTE MKKTIAILRA LVEVMEFLSK 180 DADPYGVGRQ ITEELRRIKS TDKTLSGELT AYNIVPLEAP SLTNAIGVFP EVRGAILAIR 240 YTEQFPRLPA KFEISGQRDA DMFDLLEYVF GFQKDNVRNQ RENIVLTIAN AQSRLGIPAQ 300 ADPSECKLGT VVRLLRCNLK VPGLNMEITF PQMGKIDETA INEVFLKVLD NYIKWCKYLR 360 IRLMAKELDA ILDHGDAIPA GSCTIENDSV SFLKQIVEPI YETLAAEADR NNNGKAAHSK 420 WRNYDDFNEY FWSPACFELN WPMRRDSAFL LKPRGRKRTG KSTFVEHRTF LHLYRSFHRL 480 WIFLALMFQA LAIIAFNDGK INLATFKSVL SIGPVFAIMN FVESSLDVLL MFGAYTTARG 540 MAISRLVIRF FWFGLSSAAV TYLYLKVLQE RNHNSNNSFY FRIYILVLGV YAALRLVLAL 600 LLKFPACHKL SEMSDQSFFQ FFKWIYEERY FVGRGLYERM SDYLRPVLVR TSALGLKCGL 660 PSVLLRLAPM TACLHPSGLQ QCPRSLSLPG ESAEFQFFGE ITQNFKEDRS GLKTGIQRTR 720 QGGKVVGDAA GVRWGGGAPS GGERRDRVRT SALVCALLVG NLHMQVPFHV LSPGKAMLQY 780 SQVLKVPSGS GGGRIEFNVT RVRLYTRDVG VVLQAIKPLV EPTQIIVDLP SVQYAWHDLV 840 SQNNKNVLTV ASLWAPVVAI YLMDIHIWYT LLSAVVGGVM GARSRLGEIR SIEMVHKRFE 900 SFPEAFVKNL VSQSQKQRFP SNSQPSQDSQ ALNKTNAAIF SPFWNEIIKS LREEDFISNR 960 EKDLLSIPSN TGSLRLVQWP LFLLSSKILL AIDLAIDCKD TQADLWSRIC RDEYMAYAVQ 1020 ECYYSIEKIL HSLVEGEGRL WVERIYREIN NSMVEGSLVL TLNLPKLPSV LRKFTALTGL 1080 LIRPETDVQA KGAAKAIFDV YEAVTHDLLS ADLREQLDTW SLLAKARNEG RLFSRIKWPN 1140 DTETKDLIKR LYLLLTVKDS AANIPKNLEA RRRLEFFTNS LFMDMPSAKP VSEMVPFSVF 1200 TPYYSETVLY SSSELRLENE DGISTLFYLQ KIFPDEWDNF LERIGRDQST GDAELQENSS 1260 DALELRFWVS YRGQTLARTG VFLKLNGIVR GMMYYRKALM LQSYLERRSL GVDDYSQVES 1320 FTSQGFESST ESRAQADLKF TYVVSCQIYG QQKQRKAPEA ADISLLLQRN EALRVAYIHV 1380 EETGTADGKI MKEFYSKLVK ADINGKDQEI YSIKLPGDPK LGEGKPENQN HAIVFTRGEA 1440 VQTIDMNQDN YLEEAMKMRN LLEEFRKIHG LRPPSILGVR EHVFTGSVSS LASFMSNQET 1500 SFVTLAQRVL AFPLKVRMHY GHPDVFDRIF HITRGGISKS SRVINISEDI FAGFNSTLRQ 1560 GNITHHEYIQ VGKGRDVGLN QIALFEGKVA GGNGEQVLSR DVYRLGQLFD FFKMFSFFYT 1620 TVGYYVCTMM TVLIVYIFLY GRAYLAFSGL DRAIALQAKM LGNTALDAVL NAQFLVQIGI 1680 FTAVPMIMGF ILEMGLLKAV FSFITMQLQL CSVFFTFSLG TRTHYFGRTI LHGGAKYRAT 1740 GRGFVVQHIK FADNYRLYSR SHFVKAFEVA LLLIVYIAYG YTDGGAVSYV LLTLSSWFLV 1800 ISWLFAPYIF NPSGFEWQKT VEDFDDWTSW LLYKGGVGVK GENSWESWWD EEQMHIQTLR 1860 GRILETILSL RFFIFQYGIV YKLHLTGKDT SLAIYGFSWV VLITIVMIFK VFTFNHKKSA 1920 KFQLFMRFTQ GITSLGLIAA ITLLVIFTRL SIADLFASVL AIIPTGWAII CLAITWKRIV 1980 KSLGLWDSVR EFARMYDAGM GMLIFAPIVF LSWFPFISTF QSRLLFNQAF SRGLEISLIL 2040 AGNKANVEQD KGRPLPKFGE WDVNNPASAE GFTVIFNQAR DDKKTNASNA TPRKTDSSVR 2100 RGGTKYNNDY RVDNYPQYPQ KVKVYDGNVD IRSKKQFIFN SIGRSGFVVV ESTHCFGAWG 2160 SCKESYKDTA FLCLRNMWSS LSHI* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam05627 | AvrRpt-cleavage | 3.0e-16 | 2049 | 2085 | 37 | + Cleavage site for pathogenic type III effector avirulence factor Avr. This domain is conserved in small families of otherwise unrelated proteins in both mono-cots and di-cots, suggesting that it has a conserved, plant-specific function. It is found both in the plant RIN4 (resistance R membrane-bound host-target protein) where it appears to contribute to the binding of the protein to both RCS (AvrRpt2 auto-cleavage site) and AvrB, the virulence factor from the infecting bacterium. The cleavage site for the AvrRpt2 avirulence protein would appear to be the sequence motifs VPQFGDW and LPKFGEW, both of which are highly conserved within the domain. | ||
| pfam14288 | FKS1_dom1 | 2.0e-28 | 364 | 444 | 82 | + 1,3-beta-glucan synthase subunit FKS1, domain-1. The FKS1_dom1 domain is likely to be the 'Class I' region just N-terminal to the first set of transmembrane helices that is involved in 1,3-beta-glucan synthesis itself. This family is found on proteins with family Glucan_synthase, pfam02364. | ||
| pfam02364 | Glucan_synthase | 0 | 1164 | 1914 | 831 | + 1,3-beta-glucan synthase component. This family consists of various 1,3-beta-glucan synthase components including Gls1, Gls2 and Gls3 from yeast. 1,3-beta-glucan synthase EC:2.4.1.34 also known as callose synthase catalyzes the formation of a beta-1,3-glucan polymer that is a major component of the fungal cell wall. The reaction catalyzed is:- UDP-glucose + {(1,3)-beta-D-glucosyl}(N) <=> UDP + {(1,3)-beta-D-glucosyl}(N+1). | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0000148 | 1,3-beta-D-glucan synthase complex |
| GO:0003843 | 1,3-beta-D-glucan synthase activity |
| GO:0006075 | (1->3)-beta-D-glucan biosynthetic process |
| GO:0016020 | membrane |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2nud_D | 0.000006 | 2055 | 2083 | 7 | 35 | A Chain A, The Structure Of The Type Iii Effector Avrb Complexed With A High-Affinity Rin4 Peptide |
| PDB | 2nud_C | 0.000006 | 2055 | 2083 | 7 | 35 | A Chain A, The Structure Of The Type Iii Effector Avrb Complexed With A High-Affinity Rin4 Peptide |
