Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna10004.1-v1.0-hybrid |
Family | PL1 |
Protein Properties | Length: 489 Molecular Weight: 52940.7 Isoelectric Point: 7.5885 |
Chromosome | Chromosome/Scaffold: 4 Start: 13705721 End: 13709908 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 202 | 407 | 0 |
IQDEPLWIIFERDMSIKLKEELIMNSFKTLDGRGASVHISGGPCITVQYVTNIIIHGLNIHDCKPGGNAMVRDSPNHFGWRTISDGDGVSIFGGSHVWVD HCSLSNCADGLVDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQ GNRFAA |
Full Sequence |
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Protein Sequence Length: 489 Download |
MAAGPTAQQR PEVAFSVATA QVSTVVAVAK SCGVELTHGV ALPSVFNSLY ILPLPPPFLH 60 THSRSSSSPS STRQTKMAMP SGPSLSLLVF LFSLLTLTLI AVSSSPVQDP ELVVQQVQRS 120 IYNASTTRRK LGYLSCGTGN PIDDCWRCDP NWEKNRQRLA DCAIGFGKNA IGGRDGRIYV 180 VTDSGDDDPV TPKPGTLRHA VIQDEPLWII FERDMSIKLK EELIMNSFKT LDGRGASVHI 240 SGGPCITVQY VTNIIIHGLN IHDCKPGGNA MVRDSPNHFG WRTISDGDGV SIFGGSHVWV 300 DHCSLSNCAD GLVDAIHGST AITISNNYMT HHDKVMLLGH SDSYTQDKNM QVTIAFNHFG 360 EGLVQRMPRC RHGYFHVVNN DYTHWEMYAI GGSANPTINS QGNRFAAPDI RFSKEVTKHE 420 DAPESEWRNW NWRSEGDMLI NGAFFTASGA GASSSYAKAS SLGARPSSLV GSITTTSGAL 480 NCRKGSRC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 6.0e-26 | 210 | 405 | 217 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 9.0e-76 | 220 | 405 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 2.0e-83 | 214 | 409 | 207 | + Amb_all domain. |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 140 | 449 | 2 | 313 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 140 | 449 | 2 | 313 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 2e-16 | 159 | 405 | 2 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1bn8_A | 0.000000000000001 | 288 | 473 | 205 | 400 | A Chain A, Bacillus Subtilis Pectate Lyase |
PDB | 2bsp_A | 0.000000000000003 | 288 | 473 | 205 | 400 | A Chain A, Bacillus Subtilis Pectate Lyase R279k Mutant |