| Basic Information | |
|---|---|
| Species | Fragaria vesca |
| Cazyme ID | mrna10037.1-v1.0-hybrid |
| Family | GH18 |
| Protein Properties | Length: 535 Molecular Weight: 59716 Isoelectric Point: 6.9984 |
| Chromosome | Chromosome/Scaffold: 1 Start: 71157 End: 75489 |
| Description | Glycosyl hydrolase family protein with chitinase insertion domain |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH18 | 37 | 361 | 0 |
| DELPASTIDTALFTHLLCAFAYINSSSYQLSINSSTQQKFSTFTNVVKLKNSKVTTLLSIWGGREDYSVLFSMLNQSSHRKSFIDSSIRTARLYEFDGLD LTGAVPRTVMHTTSLGTFLDEWRAAVDSEASKSGKPGLLLIMAVYHHMQVVNNETYPIDSIKKNLNWVHLVAYDYYLPKMENYTHPHAALYDPISNGTNT NSRVKDLISRGLPASKLVLGLPYHGYGWTVLNPSNHVSNVGAPALGHAGETIDGSMSYKYIKWLVKAYESSAVLMYNDTYVVNFCTIGSIWINFDDVEAI KTKVSYAKEMGLLGYNVFQVSNDDN | |||
| Full Sequence |
|---|
| Protein Sequence Length: 535 Download |
| MQHHLSKVLL LLLLFSLNFN CSYTQTWIKA GYHYAGDELP ASTIDTALFT HLLCAFAYIN 60 SSSYQLSINS STQQKFSTFT NVVKLKNSKV TTLLSIWGGR EDYSVLFSML NQSSHRKSFI 120 DSSIRTARLY EFDGLDLTGA VPRTVMHTTS LGTFLDEWRA AVDSEASKSG KPGLLLIMAV 180 YHHMQVVNNE TYPIDSIKKN LNWVHLVAYD YYLPKMENYT HPHAALYDPI SNGTNTNSRV 240 KDLISRGLPA SKLVLGLPYH GYGWTVLNPS NHVSNVGAPA LGHAGETIDG SMSYKYIKWL 300 VKAYESSAVL MYNDTYVVNF CTIGSIWINF DDVEAIKTKV SYAKEMGLLG YNVFQVSNDD 360 NWVLSRAAAE EEGGRQNKKQ LLVIVLVTIS IPPPQNSAVK TLLSIGGGGG DKALSDIFAS 420 MVSNPSSLSN FIDSTIEVAR KFGFDGLDLD WEYPESPKEM KALGHWLKQW PREQERGPGH 480 NRPPPLLTAA VYFSVEFFLD PVIHSYPLKY MEKYLYWANG AWSNIIGLNA PLFD* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| smart00636 | Glyco_18 | 3.0e-25 | 395 | 534 | 153 | + Glyco_18 domain. | ||
| cd02879 | GH18_plant_chitinase_class_V | 4.0e-40 | 396 | 534 | 148 | + The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity. | ||
| pfam00704 | Glyco_hydro_18 | 7.0e-50 | 40 | 359 | 326 | + Glycosyl hydrolases family 18. | ||
| smart00636 | Glyco_18 | 1.0e-55 | 36 | 359 | 337 | + Glyco_18 domain. | ||
| cd02879 | GH18_plant_chitinase_class_V | 6.0e-106 | 25 | 365 | 345 | + The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3aqu_D | 0 | 25 | 370 | 2 | 341 | A Chain A, Crystal Structure Of A Class V Chitinase From Arabidopsis Thaliana |
| PDB | 3aqu_D | 2e-24 | 395 | 534 | 63 | 204 | A Chain A, Crystal Structure Of A Class V Chitinase From Arabidopsis Thaliana |
| PDB | 3aqu_C | 0 | 25 | 370 | 2 | 341 | A Chain A, Crystal Structure Of A Class V Chitinase From Arabidopsis Thaliana |
| PDB | 3aqu_C | 2e-24 | 395 | 534 | 63 | 204 | A Chain A, Crystal Structure Of A Class V Chitinase From Arabidopsis Thaliana |
| PDB | 3aqu_B | 0 | 25 | 370 | 2 | 341 | A Chain A, Crystal Structure Of A Class V Chitinase From Arabidopsis Thaliana |
