Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna10146.1-v1.0-hybrid |
Family | GH28 |
Protein Properties | Length: 403 Molecular Weight: 42678.9 Isoelectric Point: 10.1661 |
Chromosome | Chromosome/Scaffold: 1 Start: 608168 End: 609864 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 57 | 389 | 0 |
WSAACFSSRSATVYVPRGTFLLKPVVFSGPCRSSRIVFQMGAGTSTTLVAPSNYWELGNTGNWILFIKVTGLSIYGGTVDARGAGYWHCKRYGKSCTAGA RSVSLFWCSNVVVSGLRTLNSQTMHMAIDHSNNVHVKNVWIRAPSGSPNTDGIHIEASTGITITASTIMTGDDCISLGSGARNVWIERIACGPGHGISIG SLGGSVNEDGVQNVTVTSSVFTKTQNGVRIKSWARASNGFARNIVYRNLIMKNVDNPIIIDQKYCPGNKGCPRQSSGVKISKVTYKNIRGSSGTQVAMNF YCSPSNPCWGIKLQDIRLTYGKKAATSSCANIG |
Full Sequence |
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Protein Sequence Length: 403 Download |
MAPKLVSAMS VVIACLVALA FLFESSHAAG GATYNVVSYG ARGDGKTDST KAFLRAWSAA 60 CFSSRSATVY VPRGTFLLKP VVFSGPCRSS RIVFQMGAGT STTLVAPSNY WELGNTGNWI 120 LFIKVTGLSI YGGTVDARGA GYWHCKRYGK SCTAGARSVS LFWCSNVVVS GLRTLNSQTM 180 HMAIDHSNNV HVKNVWIRAP SGSPNTDGIH IEASTGITIT ASTIMTGDDC ISLGSGARNV 240 WIERIACGPG HGISIGSLGG SVNEDGVQNV TVTSSVFTKT QNGVRIKSWA RASNGFARNI 300 VYRNLIMKNV DNPIIIDQKY CPGNKGCPRQ SSGVKISKVT YKNIRGSSGT QVAMNFYCSP 360 SNPCWGIKLQ DIRLTYGKKA ATSSCANIGG SKSGVIIPRS CF* |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
pfam00295 | Glyco_hydro_28 | 7.0e-70 | 61 | 393 | 336 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
PLN02793 | PLN02793 | 1.0e-75 | 1 | 402 | 422 | + Probable polygalacturonase |
PLN02218 | PLN02218 | 2.0e-76 | 32 | 399 | 375 | + polygalacturonase ADPG |
PLN02188 | PLN02188 | 3.0e-88 | 10 | 401 | 402 | + polygalacturonase/glycoside hydrolase family protein |
PLN02155 | PLN02155 | 8.0e-133 | 10 | 402 | 394 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1czf_B | 1e-21 | 123 | 388 | 97 | 356 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1czf_A | 1e-21 | 123 | 388 | 97 | 356 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 2iq7_G | 1e-20 | 75 | 388 | 20 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 1e-20 | 75 | 388 | 20 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 1e-20 | 75 | 388 | 20 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |