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Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna10147.1-v1.0-hybrid |
Family | GH28 |
Protein Properties | Length: 397 Molecular Weight: 41926.9 Isoelectric Point: 9.0928 |
Chromosome | Chromosome/Scaffold: 1 Start: 611439 End: 612983 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 55 | 382 | 0 |
AAACSSNQTATMYVPKGRFLLKAAVFRGPCKSRIKVQIYGSLIAPTDYWALGNSGYWILFIKVNRLAVFGGTLDGKGAGFWACRKAGKSCPVGARSITFN WANDVVISGLVSINSQQTHLVINSCNNVVVRNVKLVAPADSPNTDGIHVQSSTGVTITGATLQTGDDCVSIGAGTKNLYMSNIKCGPGHGVSIGSLGKEA NEAGVQNVTLTNAVFSGSDNGVRIKTWARPSNGFVTNVLFRNIMMRNVENPIIIDQNYCPNNNGCPNQTSGVKISQVTYKNIQGTSATAEAVTFDCSPSN PCRGIRLEDIKLTYMNQLATSSCKNIDG |
Full Sequence |
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Protein Sequence Length: 397 Download |
MAMINHCAGG GLLLISLCFF MFGLSDAAAT YNVMKYGAKA DGKSDSTQAF VKTWAAACSS 60 NQTATMYVPK GRFLLKAAVF RGPCKSRIKV QIYGSLIAPT DYWALGNSGY WILFIKVNRL 120 AVFGGTLDGK GAGFWACRKA GKSCPVGARS ITFNWANDVV ISGLVSINSQ QTHLVINSCN 180 NVVVRNVKLV APADSPNTDG IHVQSSTGVT ITGATLQTGD DCVSIGAGTK NLYMSNIKCG 240 PGHGVSIGSL GKEANEAGVQ NVTLTNAVFS GSDNGVRIKT WARPSNGFVT NVLFRNIMMR 300 NVENPIIIDQ NYCPNNNGCP NQTSGVKISQ VTYKNIQGTS ATAEAVTFDC SPSNPCRGIR 360 LEDIKLTYMN QLATSSCKNI DGTSTGVLMP QSCVAS* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 8.0e-97 | 58 | 380 | 326 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 1.0e-102 | 27 | 391 | 372 | + polygalacturonase ADPG | ||
PLN02188 | PLN02188 | 7.0e-107 | 12 | 393 | 398 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02793 | PLN02793 | 2.0e-108 | 33 | 396 | 372 | + Probable polygalacturonase | ||
PLN02155 | PLN02155 | 2.0e-171 | 13 | 394 | 383 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2iq7_G | 7e-22 | 56 | 380 | 16 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 7e-22 | 56 | 380 | 16 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 7e-22 | 56 | 380 | 16 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 7e-22 | 56 | 380 | 16 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_C | 7e-22 | 56 | 380 | 16 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |