Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna11078.1-v1.0-hybrid |
Family | GH28 |
Protein Properties | Length: 466 Molecular Weight: 49308.8 Isoelectric Point: 7.9775 |
Chromosome | Chromosome/Scaffold: 2 Start: 16118400 End: 16120332 |
Description | polygalacturonase 4 |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 117 | 450 | 0 |
KGPAKVVVPKGTFLIGPVVFQGPCTSSKEPIMVEIQGEVKATTDLSDYTSPEWITFENVDGLIVTGDGVMNGQGEKTWNGNGCDKDDCPHAPSNMKFIKV KNALIEKITSLNSKYFHYHITVSSRVTIDSVHITAPGESPNTDGCHISDSDNVKVINSIIGTGDDCVSIGKGARQITVNNVTCGPGHGISVGSLGKYKNE QPVVGVTVTNCKLVNTTNGARIKTWANNYGGDASGITFDNLVMEHVKAPIVIDQSYGTKKDPKNPNAGKQSLYKLHDIHFRNIKGTSSQNVAMSLACSAT KPCEGVELSEIDISYGGASNSKKTDIASECYNAK |
Full Sequence |
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Protein Sequence Length: 466 Download |
MSMGLRSPNT VIARRLDAII LVGLVFLSCM SDGASRGHLF GAGALRRSLT DTTNRKVFDV 60 TAFGAKPESG KGRQMKELPG GGDPTKPQPD DGGDGDDNDT GMAFIKTWVA ACRGEYKGPA 120 KVVVPKGTFL IGPVVFQGPC TSSKEPIMVE IQGEVKATTD LSDYTSPEWI TFENVDGLIV 180 TGDGVMNGQG EKTWNGNGCD KDDCPHAPSN MKFIKVKNAL IEKITSLNSK YFHYHITVSS 240 RVTIDSVHIT APGESPNTDG CHISDSDNVK VINSIIGTGD DCVSIGKGAR QITVNNVTCG 300 PGHGISVGSL GKYKNEQPVV GVTVTNCKLV NTTNGARIKT WANNYGGDAS GITFDNLVME 360 HVKAPIVIDQ SYGTKKDPKN PNAGKQSLYK LHDIHFRNIK GTSSQNVAMS LACSATKPCE 420 GVELSEIDIS YGGASNSKKT DIASECYNAK VTTKGKINPA APACK* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 4.0e-68 | 103 | 450 | 350 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 1.0e-77 | 103 | 459 | 364 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 1.0e-82 | 103 | 464 | 370 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 2.0e-93 | 119 | 452 | 334 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 5.0e-103 | 103 | 464 | 366 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1hg8_A | 3e-17 | 115 | 437 | 7 | 339 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
PDB | 1bhe_A | 2e-16 | 180 | 420 | 113 | 353 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 0.000000000000005 | 145 | 436 | 20 | 325 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.000000000000005 | 145 | 436 | 20 | 325 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.000000000000005 | 145 | 436 | 20 | 325 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Sequence Alignments (This image is cropped. Click for full image.) |
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