Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna11093.1-v1.0-hybrid |
Family | GH28 |
Protein Properties | Length: 570 Molecular Weight: 62280.6 Isoelectric Point: 7.274 |
Chromosome | Chromosome/Scaffold: 2 Start: 16176077 End: 16181338 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 185 | 531 | 0 |
DKGGAQLYVPPGRWLTGSFYLTSHLTLFIETGATILGSQDYTHWGIEEPLPSYGRGIDLPGWRYRSLINGDDLHDVVITGGNGTIDGQGSVWWAQFNSHS LNYSRPHLVEFTRCDNVVISNLTFLNSPAWNIHPTYCRYVKVQNITLHAYPASPYTSGIVPDSSMHVCIENCNISMGHDAIVLKSGWDEYGIAYGKPTKS VHIRGVNLQSSLGSGLAFGSEMSGGILSVLVERLHLSDSFIGIALKTTRGRGGYMKDIVISNVEMENIHTAIQVTGQSGTHPDDKFDPDQLPFVKGITFD NMVGSNITFAGNFSGINKSPFTSICLSNVSFSMTGNSSSSWFCRDVK |
Full Sequence |
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Protein Sequence Length: 570 Download |
MMGEKYGRDC ESVGSKLLGG VPERVTDTQY PTGYWAGVEL KLPKKLPNTT KGPGGPLHAD 60 ATIGCGPALL TPPFDGSIII IRRTWSHHHR MAYQAKFHYK VLAGVCGYLV FIEKVERLMK 120 RLLALVLVLG YSSALQYEGE CDNQKALNPR PHSVSLLEFG AVGDGKTLNT VAFQNAVFYV 180 KSFADKGGAQ LYVPPGRWLT GSFYLTSHLT LFIETGATIL GSQDYTHWGI EEPLPSYGRG 240 IDLPGWRYRS LINGDDLHDV VITGGNGTID GQGSVWWAQF NSHSLNYSRP HLVEFTRCDN 300 VVISNLTFLN SPAWNIHPTY CRYVKVQNIT LHAYPASPYT SGIVPDSSMH VCIENCNISM 360 GHDAIVLKSG WDEYGIAYGK PTKSVHIRGV NLQSSLGSGL AFGSEMSGGI LSVLVERLHL 420 SDSFIGIALK TTRGRGGYMK DIVISNVEME NIHTAIQVTG QSGTHPDDKF DPDQLPFVKG 480 ITFDNMVGSN ITFAGNFSGI NKSPFTSICL SNVSFSMTGN SSSSWFCRDV KGFSQKVSPE 540 PCSDLKDLSF NASSSCFFSL QTYNYGTDF* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 1.0e-22 | 252 | 531 | 292 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 3.0e-23 | 151 | 514 | 378 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 3.0e-24 | 150 | 542 | 421 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 6.0e-27 | 152 | 539 | 409 | + Probable polygalacturonase At3g15720 | ||
COG5434 | PGU1 | 4.0e-52 | 154 | 466 | 336 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 6e-39 | 152 | 512 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 6e-39 | 152 | 512 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 6e-39 | 152 | 512 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 6e-39 | 152 | 512 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 0.00000000000002 | 198 | 530 | 52 | 372 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
Sequence Alignments (This image is cropped. Click for full image.) |
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