Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna11323.1-v1.0-hybrid |
Family | CE8 |
Protein Properties | Length: 339 Molecular Weight: 37524.8 Isoelectric Point: 9.3169 |
Chromosome | Chromosome/Scaffold: 1 Start: 4329797 End: 4332254 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 41 | 332 | 0 |
VDKNPSRGDFTSIQDAIDSLPFINLVRVVIKVHAGVYKEKVNIPPLKSFITIEGAGAEKTIVQWGDTAQTPSGPKKQPMGTFNSATFAVNSPYFIARNIT FKNTTPVPAPGAIGKQAVAFRISADTAAFLGCRFLGAQDTLYDHVGRHYYKDCYIEGSVDFIFGNGLSLFEGCHVHAIATNTGALTAQGRSSLLEETGFS FVNCKVTGSGALYLGRAWGPFSRVVFAYTYMDNIIMPKGWYNWGDPNREMTVFYGQYKCTGPGAQYAGRVSWSRELTDEEAKPFISLTFIDG |
Full Sequence |
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Protein Sequence Length: 339 Download |
MTRVQFSEQQ FMKWVKFVGS LKHSVYKNAK NKLFPSYTLN VDKNPSRGDF TSIQDAIDSL 60 PFINLVRVVI KVHAGVYKEK VNIPPLKSFI TIEGAGAEKT IVQWGDTAQT PSGPKKQPMG 120 TFNSATFAVN SPYFIARNIT FKNTTPVPAP GAIGKQAVAF RISADTAAFL GCRFLGAQDT 180 LYDHVGRHYY KDCYIEGSVD FIFGNGLSLF EGCHVHAIAT NTGALTAQGR SSLLEETGFS 240 FVNCKVTGSG ALYLGRAWGP FSRVVFAYTY MDNIIMPKGW YNWGDPNREM TVFYGQYKCT 300 GPGAQYAGRV SWSRELTDEE AKPFISLTFI DGSEWLKF* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02304 | PLN02304 | 4.0e-116 | 38 | 338 | 309 | + probable pectinesterase | ||
PLN02634 | PLN02634 | 7.0e-118 | 48 | 336 | 290 | + probable pectinesterase | ||
PLN02432 | PLN02432 | 5.0e-120 | 35 | 337 | 303 | + putative pectinesterase | ||
PLN02665 | PLN02665 | 1.0e-120 | 38 | 336 | 301 | + pectinesterase family protein | ||
PLN02682 | PLN02682 | 0 | 2 | 337 | 336 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 48 | 337 | 17 | 309 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 0 | 48 | 337 | 13 | 305 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 3e-26 | 37 | 331 | 31 | 360 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_B | 6e-19 | 36 | 324 | 3 | 328 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_A | 6e-19 | 36 | 324 | 3 | 328 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
Sequence Alignments (This image is cropped. Click for full image.) |
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