| Basic Information | |
|---|---|
| Species | Fragaria vesca |
| Cazyme ID | mrna11624.1-v1.0-hybrid |
| Family | CBM57 |
| Protein Properties | Length: 849 Molecular Weight: 93736.8 Isoelectric Point: 6.3583 |
| Chromosome | Chromosome/Scaffold: Start: 9274779 End: 9280831 |
| Description | Leucine-rich repeat transmembrane protein kinase |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| CBM57 | 602 | 771 | 5.5e-31 |
| SIKCGGTSQKSVSGIKYDDDSEILGAASTYKSSRNQWAVSNTGNFLFNSNGPQYIASTDSQIKGTLESELYKTARISPTSLRYYGLDLKNGKYVVELHFA ELQMEDTASWKGLGRRLFDVYIQGERVVQDLNIQKEAGGSKKALIKKFETNVSNTIMDIHFLWAGKGTCC | |||
| Full Sequence |
|---|
| Protein Sequence Length: 849 Download |
| MELQLGLALS LPVHHNAPVK GFDVTGRHGV MRSLDIWSYG CSMERKKKRI FDTAFEDDDE 60 SKTLPLLLWH GQPGEEDDDG KRQKKRDFCS FIDAKDGEGD QVVGWPPIKS WRKKMLFSDH 120 DQHHGHGHAH HNFQNHQNLV EKEDDGSENS MYVKVKMEGV GILRKIDIKL HHSYQTLRDS 180 LITMFAKCKE CENEDTADFT VTYQDMHGHW LLAGDVPWHL LLVLKETVKA EKQGTVLMTL 240 LLQMELWSAL SLLLLCAFQL VYAQRTTAPD EVTALNKVLE HWNLANHLNL TIDPCTENAT 300 WASETANPRV ACDCTGSTCH ITHLKIYALD IVGDLPGELF ELKQLIDLNL GQNVLSGRIP 360 PEIGLLSNMQ YLSLGINNLS GPVPPELGKL TKLVELSFSS NEFSGPLPVE LGKLTSLQQL 420 YIDSSGVTGP IPQEFSSLKS LQTLRLEGTL LEGPIPSNFG ALTKLDILRI GDLSKEDSSL 480 DFLENLTSLS MLSLRSCQVS GKIPEQIGKF SKLQYLYLGN NDLSGELPTS IVSPKLIALD 540 VSFNPISGNL PSNFSTEGFS LNVLGTSINA KGLSDSGEPG LLHCLQGDTK CTNKLPAVSS 600 FSIKCGGTSQ KSVSGIKYDD DSEILGAAST YKSSRNQWAV SNTGNFLFNS NGPQYIASTD 660 SQIKGTLESE LYKTARISPT SLRYYGLDLK NGKYVVELHF AELQMEDTAS WKGLGRRLFD 720 VYIQGERVVQ DLNIQKEAGG SKKALIKKFE TNVSNTIMDI HFLWAGKGTC CIPYQGTYGP 780 LVSAIHVHQV SGAESSSSSE RKRVGTIVGV SLGCAAVMII MSSVFYLWWI KDDAEPRHVR 840 IDGRVRKT* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN00113 | PLN00113 | 1.0e-25 | 293 | 554 | 268 | + leucine-rich repeat receptor-like protein kinase; Provisional | ||
| PLN00113 | PLN00113 | 2.0e-27 | 333 | 555 | 250 | + leucine-rich repeat receptor-like protein kinase; Provisional | ||
| PLN00113 | PLN00113 | 4.0e-29 | 316 | 556 | 243 | + leucine-rich repeat receptor-like protein kinase; Provisional | ||
| PLN00113 | PLN00113 | 1.0e-34 | 326 | 558 | 239 | + leucine-rich repeat receptor-like protein kinase; Provisional | ||
| pfam11721 | Malectin | 3.0e-55 | 600 | 785 | 188 | + Di-glucose binding within endoplasmic reticulum. Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005515 | protein binding |
| GO:0005634 | nucleus |
| GO:0006355 | regulation of transcription, DNA-dependent |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3rj0_A | 3e-19 | 330 | 552 | 351 | 553 | A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range Protein K1 Reveal A Novel Ankyrin Repeat Interaction Surface For K1s Function |
| PDB | 3rj0_A | 6e-16 | 316 | 556 | 436 | 699 | A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range Protein K1 Reveal A Novel Ankyrin Repeat Interaction Surface For K1s Function |
| PDB | 3rj0_A | 0.000000000000006 | 320 | 556 | 176 | 437 | A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range Protein K1 Reveal A Novel Ankyrin Repeat Interaction Surface For K1s Function |
| PDB | 3rj0_A | 0.00000000000009 | 345 | 531 | 393 | 555 | A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range Protein K1 Reveal A Novel Ankyrin Repeat Interaction Surface For K1s Function |
| PDB | 3rj0_A | 0.0000000000001 | 330 | 528 | 474 | 718 | A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range Protein K1 Reveal A Novel Ankyrin Repeat Interaction Surface For K1s Function |
