Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna12538.1-v1.0-hybrid |
Family | GH28 |
Protein Properties | Length: 599 Molecular Weight: 66603 Isoelectric Point: 6.762 |
Chromosome | Chromosome/Scaffold: 1 Start: 6300506 End: 6306514 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 176 | 482 | 0 |
EHPGPRYGSLIHGQNLKDIVITGHNGTINGQGQTWWKKYRQKLLNHTRGPLVQIMWSSDIVITNITLRDSPFWTLHPYDCKNITIRNVTILAPIFEAPNT DGIDPDSCEDMVIEDCYISVGDDGIAIKSGWDQLHFMLVASWVPGIDVTCLLQLNLEGANSTLDSPALERGVAGISIGSEMSGGVSNVTVENLLVWGSRR AVRIKTAPGRGGYVRQITYRNLTFDNVRVGIVIKTDYNEHPDDGYDRKAFPVIRDISFTSIHGQGVRVPVRIHGSEEIPIRNVTFRDMSVGLTYKKKHIF QCAFVQG |
Full Sequence |
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Protein Sequence Length: 599 Download |
MVETSPLGRF HHHRLDLKRW LPSFLSSHKT LFTLLWIAAF ASVFVWQRNI IDGFSFFRRV 60 PARPMPRLRP VAFNLTEFGA VGDGVTLNTE AFERAVMAIS KLGKKGGGQL NVPPGRWLTA 120 PFNLTSHMTL FLAEDAEILG LQNLELVMNS LDWDLDQDEN YWPLMPPLPS YGYGREHPGP 180 RYGSLIHGQN LKDIVITGHN GTINGQGQTW WKKYRQKLLN HTRGPLVQIM WSSDIVITNI 240 TLRDSPFWTL HPYDCKNITI RNVTILAPIF EAPNTDGIDP DSCEDMVIED CYISVGDDGI 300 AIKSGWDQLH FMLVASWVPG IDVTCLLQLN LEGANSTLDS PALERGVAGI SIGSEMSGGV 360 SNVTVENLLV WGSRRAVRIK TAPGRGGYVR QITYRNLTFD NVRVGIVIKT DYNEHPDDGY 420 DRKAFPVIRD ISFTSIHGQG VRVPVRIHGS EEIPIRNVTF RDMSVGLTYK KKHIFQCAFV 480 QGRVIGTIFP APCENLDRYD EQGKLVKQST GVEGAIEEAD ELEVGVVVGG VLIGLSMVVI 540 ATRKRKRWLF HGEREREGIV DGADGDAEHL VGGDSTSSPV LRENKNPQAT EQINMGGK* 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 2.0e-23 | 70 | 465 | 404 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 9.0e-26 | 31 | 493 | 481 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 3.0e-37 | 72 | 465 | 406 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 5.0e-38 | 186 | 472 | 295 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 4.0e-60 | 72 | 416 | 356 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 4e-39 | 66 | 462 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 4e-39 | 66 | 462 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 4e-39 | 66 | 462 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 4e-39 | 66 | 462 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 0.00000000000001 | 201 | 463 | 117 | 359 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
Sequence Alignments (This image is cropped. Click for full image.) |
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