| Basic Information | |
|---|---|
| Species | Fragaria vesca |
| Cazyme ID | mrna12575.1-v1.0-hybrid |
| Family | GT47 |
| Protein Properties | Length: 1680 Molecular Weight: 188753 Isoelectric Point: 7.8548 |
| Chromosome | Chromosome/Scaffold: 7 Start: 19436993 End: 19446077 |
| Description | cellulose synthase-like D3 |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GT47 | 99 | 409 | 0 |
| LRVYVYDMPSKFTYDLLRLFITSYKDTSNLTSNGSPVHRLIEQHSIDYWLWADLIAPESERLLKSVVRVRRQEEADLFYIPFFTTISFFLMEKQQCKSLY REALKWITDQPAWNRSGGRDHIIPVHHPWSFKSVRRSVKNAIWLLPDMDSTGNWYKPGQVYLEKDLILPYVANVDLCDARCVSETQSKRTTLLFFRGRLK RNAGGKIRAKLVAELSGAEGVSIEEGTAGEGGKAAAQTGMRKSTFCLNPAGDTPSSARLFDAIVSGCIPVIVSDELELPFEGILDYRKIALFVSSSDAVQ PGWLLTYLRNI | |||
| Full Sequence |
|---|
| Protein Sequence Length: 1680 Download |
| MRKQMARPKS PVLVLTLVLA GLSLLFFILL SFRSSSDGFS SDGPLHPNPI YKPETSFVAS 60 LERFLLAPHN SQTTTHQDPE HVDDERLYSD PYYPLSMPLR VYVYDMPSKF TYDLLRLFIT 120 SYKDTSNLTS NGSPVHRLIE QHSIDYWLWA DLIAPESERL LKSVVRVRRQ EEADLFYIPF 180 FTTISFFLME KQQCKSLYRE ALKWITDQPA WNRSGGRDHI IPVHHPWSFK SVRRSVKNAI 240 WLLPDMDSTG NWYKPGQVYL EKDLILPYVA NVDLCDARCV SETQSKRTTL LFFRGRLKRN 300 AGGKIRAKLV AELSGAEGVS IEEGTAGEGG KAAAQTGMRK STFCLNPAGD TPSSARLFDA 360 IVSGCIPVIV SDELELPFEG ILDYRKIALF VSSSDAVQPG WLLTYLRNIS PAQIEKMRQN 420 LVKYSRHFIY SSPAQPLGPE DLVWRMMAGK LVNIKLHTRR SQRVVKESRS ICTCDCRRPN 480 STTSDQTDLY NNVAIYTFVS TIGGLLHLVS LTASSPTWRW GQLSAATSLN MAGKSFKGTR 540 SNLSSSSDIP DALGKPPIPT VTFGRRTSSG RYISYSRDDL DSEIGSGDFM NYTVHIPPTP 600 DNQPMDPSIS QKVEEQYVSN SLFTGGFNSV TRAHLMDKVI ESETNHPQMA GAKGSSCSIP 660 GCDAKVMSDQ RGEDILPCEC DFKICRDCYT DAVKTGGGVC PGCKEPYKNT DLDEMAMESA 720 LPPLPLPLPN GMSKMERRLS LMKSTKSVLM RSQTGDFDHN RWLFETKGTY GYGNAIWSKE 780 GGLGNGKDDD VVEPTELMNK PWRPLTRKLK IPAAILSPYR LLIFVRMVVL GLFLAWRISN 840 PNTDAMWLWG MSIVCEIWFA FSWLLDQLPK LCPINRSTDL NVLREKFETP TISNPTGKSD 900 LPGIDIFVST ADPDKEPPLV TANTILSILA TDYPVEKLAC YVSDDGGALL TFEAMAEAAS 960 FANIWVPFCR KHAIEPRNPE SYFSLKRDPY KNKVKSDFVK DRRRVKREYD EFKVRINGLP 1020 ESIRRRSDAY HAREEIKAMK LQRQNREDEP VESVKIPKAT WMADGTHWPG TWLTSSAEHS 1080 RSDHAGIIQV MLKPPSDEPL HGADGTIDEA RLIDLTDIDI RLPMLVYVSR EKRPGYDHNK 1140 KAGAMNALVR ASAIMSNGPF ILNLDCDHYI YNSQAMREGM CFMMDRGGDR LCYVQFPQRF 1200 EGIDPSDRYA NHNTVFFDVN MRALDGLQGP VYVGTGCLFR RIALYGFDPP RSKEHHQGCC 1260 SCCFSSRKKN KHASVAHTPE ENRALRMGDS DDEEMNLSLL PKRFGNSTFL IDSIPVAEYQ 1320 GRPLADHPAV KNGRPPGALT IPRELLDAST VAEAISVISC WYEDKTEWGD RVGWIYGSVT 1380 EDVVTGYRMH NRGWKSVYCV TKRDAFRGTA PINLTDRLHQ VLRWATGSVE IFFSRNNALL 1440 ASPRMKLLQR IAYLNVGIYP FTSIFLIVYC FLPALSLFSG QFIVQSLNVT FLTYLLVITL 1500 TLCMLAILEI KWSGIELEEW WRNEQFWLIG GTSAHLAAVI QGLLKVIAGI EISFTLTSKS 1560 GGDDEDDEFA DLYIVKWSSL MIPPITIMMV NLIAIAVGFS RTIYSVIPQW SRLIGGVFFS 1620 FWVLAHLYPF AKGLMGRRGR TPTIVFVWSG LIAITISLLW VAINPPAGAT EIGGSFEFP* 1680 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02436 | PLN02436 | 0.001 | 654 | 708 | 56 | + cellulose synthase A | ||
| PLN02248 | PLN02248 | 0 | 531 | 1679 | 1153 | + cellulose synthase-like protein | ||
| pfam03552 | Cellulose_synt | 0 | 904 | 1679 | 793 | + Cellulose synthase. Cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues, is the major component of wood and thus paper, and is synthesised by plants, most algae, some bacteria and fungi, and even some animals. The genes that synthesise cellulose in higher plants differ greatly from the well-characterized genes found in Acetobacter and Agrobacterium sp. More correctly designated as 'cellulose synthase catalytic subunits', plant cellulose synthase (CesA) proteins are integral membrane proteins, approximately 1,000 amino acids in length. There are a number of highly conserved residues, including several motifs shown to be necessary for processive glycosyltransferase activity. | ||
| PLN02915 | PLN02915 | 0 | 642 | 1665 | 1116 | + cellulose synthase A [UDP-forming], catalytic subunit | ||
| PLN02436 | PLN02436 | 0 | 770 | 1665 | 949 | + cellulose synthase A | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0016020 | membrane |
| GO:0016760 | cellulose synthase (UDP-forming) activity |
| GO:0030244 | cellulose biosynthetic process |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 4hg6_A | 0.0000004 | 1370 | 1495 | 330 | 452 | B Chain B, Structure Of A Cellulose Synthase - Cellulose Translocation Intermediate |
| PDB | 1ur6_B | 0.002 | 674 | 707 | 16 | 49 | A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex |
