Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna12930.1-v1.0-hybrid |
Family | CE8 |
Protein Properties | Length: 374 Molecular Weight: 41086.6 Isoelectric Point: 8.6178 |
Chromosome | Chromosome/Scaffold: 1 Start: 6486079 End: 6488091 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 80 | 363 | 0 |
RVKKDGTGDFKTVTDAVKSIPTGNKRRVVVWIGGGEYREKILVEMTKPFVTFYGDKNDMPSITYDGTAAVYGTWNSATVAVESDYFVAVNIAFVNSAPMP DGIRKDAQAVAMRISGDKAAFYNCKFMGFQDTLCDDKGRHFFKDCFIQGTVDFIFGNGKSLYLKSTLNSVANGVGVITAHGRSEAQDDTGFSFVYCTIKG TGDTLLGRAWRGRARVVFAYTYMGNLVDRKGWSDYNDNTRASTVYYGEYKCSGPGSSSNERVKYAKMLSDVEARPFISLTFIQG |
Full Sequence |
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Protein Sequence Length: 374 Download |
MASKPTSAVL VVSAFLTLAL LVSGKPNLIP ENEADLDDWI VRNMREYDKR KAVLNTRSDV 60 PGTHFDTELA AAEDAGRVIR VKKDGTGDFK TVTDAVKSIP TGNKRRVVVW IGGGEYREKI 120 LVEMTKPFVT FYGDKNDMPS ITYDGTAAVY GTWNSATVAV ESDYFVAVNI AFVNSAPMPD 180 GIRKDAQAVA MRISGDKAAF YNCKFMGFQD TLCDDKGRHF FKDCFIQGTV DFIFGNGKSL 240 YLKSTLNSVA NGVGVITAHG RSEAQDDTGF SFVYCTIKGT GDTLLGRAWR GRARVVFAYT 300 YMGNLVDRKG WSDYNDNTRA STVYYGEYKC SGPGSSSNER VKYAKMLSDV EARPFISLTF 360 IQGTKWVLPP PNL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02671 | PLN02671 | 1.0e-94 | 2 | 367 | 375 | + pectinesterase | ||
PLN02432 | PLN02432 | 1.0e-96 | 78 | 367 | 290 | + putative pectinesterase | ||
PLN02304 | PLN02304 | 3.0e-109 | 74 | 369 | 305 | + probable pectinesterase | ||
PLN02682 | PLN02682 | 2.0e-117 | 8 | 369 | 369 | + pectinesterase family protein | ||
PLN02665 | PLN02665 | 0 | 1 | 373 | 375 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 76 | 367 | 6 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 0 | 81 | 367 | 7 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 1e-17 | 89 | 355 | 18 | 328 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 1e-17 | 89 | 355 | 18 | 328 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 1e-17 | 89 | 355 | 18 | 328 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |